Wall clock time and date at job start Mon Mar 30 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.46875 * 2 1 4 4 O 1.42092 * 109.46990 * 70.95096 * 3 2 1 5 5 N 1.65608 * 102.99617 * 180.02562 * 3 2 1 6 6 C 1.29444 * 119.99550 * 179.97438 * 5 3 2 7 7 C 1.47365 * 119.99688 * 179.97438 * 6 5 3 8 8 C 1.39682 * 120.20063 * 179.97438 * 7 6 5 9 9 C 1.37851 * 119.91415 * 180.02562 * 8 7 6 10 10 C 1.38551 * 120.32177 * 0.02562 * 9 8 7 11 11 C 1.38061 * 120.40581 * 359.70466 * 10 9 8 12 12 C 1.38791 * 120.07835 * 0.55413 * 11 10 9 13 13 O 1.35547 * 120.16074 * 179.74498 * 12 11 10 14 14 C 1.34810 * 117.00232 * 5.59571 * 13 12 11 15 15 H 1.07997 * 119.99723 * 354.93624 * 14 13 12 16 16 C 1.38685 * 119.99998 * 174.66298 * 14 13 12 17 17 N 1.31523 * 120.00459 * 0.27466 * 16 14 13 18 18 Si 1.86809 * 119.99867 * 180.27741 * 16 14 13 19 19 H 1.48496 * 109.47052 * 59.99512 * 18 16 14 20 20 H 1.48496 * 109.47105 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46687 * 299.99931 * 18 16 14 22 22 H 1.09007 * 109.46557 * 299.99784 * 1 2 3 23 23 H 1.08994 * 109.47337 * 59.99433 * 1 2 3 24 24 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46653 * 240.00721 * 2 1 3 26 26 H 1.08994 * 109.47337 * 120.00566 * 2 1 3 27 27 H 1.07997 * 120.00595 * 0.02562 * 6 5 3 28 28 H 1.08000 * 120.03869 * 359.97438 * 8 7 6 29 29 H 1.07995 * 119.83628 * 180.02562 * 9 8 7 30 30 H 1.08003 * 119.79318 * 179.97438 * 10 9 8 31 31 H 1.08005 * 119.95865 * 180.29601 * 11 10 9 32 32 H 0.96999 * 120.00114 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8802 2.3026 1.2663 5 7 3.7802 1.5236 -0.0007 6 6 4.5495 2.5646 -0.0014 7 6 6.0138 2.3985 -0.0015 8 6 6.8480 3.5189 -0.0027 9 6 8.2170 3.3566 -0.0033 10 6 8.7709 2.0867 -0.0032 11 6 7.9588 0.9702 0.0036 12 6 6.5784 1.1140 -0.0011 13 8 5.7795 0.0190 0.0003 14 6 6.3842 -1.1796 0.1237 15 1 7.4623 -1.2420 0.1332 16 6 5.6217 -2.3318 0.2440 17 7 4.3088 -2.2558 0.2323 18 14 6.4597 -3.9918 0.4227 19 1 7.3041 -3.9911 1.6442 20 1 5.4304 -5.0564 0.5335 21 1 7.3107 -4.2473 -0.7672 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.1185 3.5548 -0.0011 28 1 6.4210 4.5109 -0.0041 29 1 8.8608 4.2237 -0.0039 30 1 9.8445 1.9695 -0.0041 31 1 8.3983 -0.0164 0.0085 32 1 3.7755 -3.0617 0.3168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692033161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:21 Heat of formation + Delta-G solvation = -36.353846 kcal Electronic energy + Delta-G solvation = -17892.681264 eV Core-core repulsion = 14945.487845 eV Total energy + Delta-G solvation = -2947.193419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71350 -38.07455 -36.92002 -36.23391 -34.23336 -33.55205 -31.68912 -30.37159 -27.33025 -25.35960 -24.16541 -23.21196 -21.52013 -19.73165 -18.96029 -18.39109 -17.54505 -16.67813 -16.24472 -16.04961 -15.93326 -15.67549 -15.43426 -15.06683 -14.44561 -14.28092 -14.11144 -13.57787 -13.51260 -13.18562 -12.93779 -12.67233 -12.44570 -12.38559 -12.28611 -12.16261 -12.10061 -11.65994 -11.25188 -10.75636 -10.51962 -9.64235 -9.01408 -8.72843 -8.39891 -6.04150 -0.08023 0.84933 1.00543 1.32064 1.42388 1.45583 1.50408 1.83582 2.16112 2.89727 3.06199 3.31094 3.58991 3.70940 4.12856 4.19916 4.24116 4.31306 4.46249 4.55253 4.71009 4.77734 4.95347 5.11104 5.11785 5.14986 5.27967 5.29356 5.60581 5.70747 5.80691 6.01205 6.28009 6.48881 7.01476 7.88998 8.77091 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.009910 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.364283 B = 2824.863488 C = 5062.015788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.426 4.426 3 S 1.450 4.550 4 O -0.964 6.964 5 N -0.822 5.822 6 C 0.297 3.703 7 C -0.203 4.203 8 C -0.023 4.023 9 C -0.208 4.208 10 C -0.044 4.044 11 C -0.268 4.268 12 C 0.149 3.851 13 O -0.157 6.157 14 C -0.426 4.426 15 H 0.095 0.905 16 C -0.009 4.009 17 N -0.880 5.880 18 Si 1.006 2.994 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.256 1.256 22 H 0.043 0.957 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.042 0.958 27 H 0.136 0.864 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 9.443 -6.286 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.565 4.565 3 S 1.558 4.442 4 O -0.950 6.950 5 N -0.643 5.643 6 C 0.094 3.906 7 C -0.210 4.210 8 C -0.044 4.044 9 C -0.227 4.227 10 C -0.063 4.063 11 C -0.287 4.287 12 C 0.092 3.908 13 O -0.057 6.057 14 C -0.503 4.503 15 H 0.112 0.888 16 C -0.211 4.211 17 N -0.514 5.514 18 Si 0.826 3.174 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.180 1.180 22 H 0.062 0.938 23 H 0.122 0.878 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.062 0.938 27 H 0.152 0.848 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.162 0.838 31 H 0.133 0.867 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.159 9.140 -6.206 11.049 hybrid contribution 0.700 -2.010 2.045 2.952 sum 0.541 7.130 -4.161 8.273 Atomic orbital electron populations 1.21414 0.90204 1.03619 1.03163 1.27332 1.03823 1.18856 1.06502 1.66602 0.83266 0.87370 1.06962 1.92966 1.83305 1.70262 1.48459 1.72287 1.24008 1.42889 1.25118 1.23916 0.92110 0.92981 0.81635 1.18747 0.92340 0.91302 1.18594 1.21399 0.93301 0.97089 0.92563 1.21114 0.94860 0.97401 1.09278 1.21368 1.00069 0.91936 0.92928 1.21295 0.92934 1.00519 1.13980 1.20198 0.90629 0.88658 0.91274 1.84240 1.33344 1.11818 1.76249 1.21853 0.93028 0.82557 1.52818 0.88761 1.26343 0.96197 1.02518 0.96020 1.70229 1.05396 1.29939 1.45861 0.84834 0.77679 0.75326 0.79516 1.19186 1.20039 1.18040 0.93776 0.87762 0.91245 0.86926 0.93836 0.84777 0.81554 0.82493 0.83793 0.86681 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 9.92 71.98 0.71 -2.97 16 2 C -0.43 -17.01 6.83 71.98 0.49 -16.52 16 3 S 1.45 54.26 13.81 -56.49 -0.78 53.48 16 4 O -0.96 -46.58 17.92 -148.98 -2.67 -49.24 16 5 N -0.82 -37.61 8.56 -52.41 -0.45 -38.06 16 6 C 0.30 11.49 10.32 87.45 0.90 12.39 16 7 C -0.20 -8.08 5.88 -20.02 -0.12 -8.20 16 8 C -0.02 -0.67 9.78 22.53 0.22 -0.45 16 9 C -0.21 -5.51 10.03 22.25 0.22 -5.29 16 10 C -0.04 -1.38 10.03 22.30 0.22 -1.15 16 11 C -0.27 -11.23 9.16 22.36 0.20 -11.02 16 12 C 0.15 7.22 6.66 22.91 0.15 7.37 16 13 O -0.16 -9.07 7.64 -20.30 -0.16 -9.22 16 14 C -0.43 -24.43 9.49 67.93 0.64 -23.78 16 15 H 0.10 5.02 5.21 -2.91 -0.02 5.00 16 16 C -0.01 -0.53 5.49 84.85 0.47 -0.06 16 17 N -0.88 -52.21 13.67 21.62 0.30 -51.91 16 18 Si 1.01 43.13 29.55 68.60 2.03 45.16 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.11 4.58 8.14 -2.39 -0.02 4.56 16 26 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.14 3.76 7.99 -2.91 -0.02 3.74 16 28 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -84.56 298.09 3.52 -81.04 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.13 Total: 18.45 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 4.13 Total: -49.68 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -0.15 Total: -89.97 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.82 Total: -58.47 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 54.26 SS G_CDS: -0.78 Total: 53.48 kcal Total: -84.56 3.52 -81.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692033161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.686 kcal (2) G-P(sol) polarization free energy of solvation -84.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds