Wall clock time and date at job start Mon Mar 30 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47301 * 2 1 4 4 O 1.42096 * 109.46936 * 76.05441 * 3 2 1 5 5 N 1.65601 * 102.99935 * 185.11019 * 3 2 1 6 6 C 1.29443 * 120.00217 * 152.15714 * 5 3 2 7 7 C 1.47371 * 119.99661 * 351.21218 * 6 5 3 8 8 C 1.39674 * 120.19988 * 329.32373 * 7 6 5 9 9 C 1.37855 * 119.91274 * 180.27577 * 8 7 6 10 10 C 1.38557 * 120.32074 * 359.72592 * 9 8 7 11 11 C 1.38055 * 120.40342 * 359.97438 * 10 9 8 12 12 C 1.38792 * 120.08160 * 0.02562 * 11 10 9 13 13 O 1.35559 * 120.15965 * 180.02562 * 12 11 10 14 14 C 1.34806 * 117.00384 * 354.39361 * 13 12 11 15 15 H 1.08002 * 119.99730 * 5.07655 * 14 13 12 16 16 C 1.38685 * 120.00004 * 184.80744 * 14 13 12 17 17 N 1.31525 * 120.00282 * 355.22842 * 16 14 13 18 18 Si 1.86804 * 119.99702 * 175.22851 * 16 14 13 19 19 H 1.48493 * 109.47332 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47095 * 120.00041 * 18 16 14 21 21 H 1.48504 * 109.47083 * 240.00000 * 18 16 14 22 22 H 1.09003 * 109.47459 * 184.95333 * 1 2 3 23 23 H 1.08998 * 109.47197 * 304.95778 * 1 2 3 24 24 H 1.09004 * 109.47212 * 64.95503 * 1 2 3 25 25 H 1.09008 * 109.46750 * 239.99769 * 2 1 3 26 26 H 1.09001 * 109.47304 * 120.00310 * 2 1 3 27 27 H 1.07998 * 120.00472 * 171.21751 * 6 5 3 28 28 H 1.08001 * 120.04941 * 359.97430 * 8 7 6 29 29 H 1.07996 * 119.84001 * 179.73636 * 9 8 7 30 30 H 1.07993 * 119.79723 * 180.02562 * 10 9 8 31 31 H 1.08003 * 119.95879 * 180.02562 * 11 10 9 32 32 H 0.96998 * 120.00496 * 185.00345 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.9882 2.2644 1.3002 5 7 3.7741 1.5257 -0.1437 6 6 4.4835 2.4537 -0.7015 7 6 3.8197 3.5810 -1.3800 8 6 2.5766 3.4000 -1.9905 9 6 1.9636 4.4572 -2.6285 10 6 2.5720 5.7016 -2.6625 11 6 3.7978 5.8967 -2.0580 12 6 4.4299 4.8440 -1.4111 13 8 5.6332 5.0340 -0.8166 14 6 6.2175 6.2367 -0.9879 15 1 5.6911 7.0236 -1.5076 16 6 7.4924 6.4653 -0.4920 17 7 8.0940 5.5421 0.2260 18 14 8.3549 8.0844 -0.8439 19 1 7.4710 8.9474 -1.6679 20 1 8.6626 8.7700 0.4370 21 1 9.6173 7.8228 -1.5810 22 1 -0.3634 -1.0238 0.0887 23 1 -0.3633 0.5888 0.8422 24 1 -0.3634 0.4351 -0.9311 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.5618 2.4018 -0.6698 28 1 2.0984 2.4319 -1.9672 29 1 1.0044 4.3149 -3.1038 30 1 2.0840 6.5240 -3.1643 31 1 4.2654 6.8698 -2.0886 32 1 8.9543 5.7286 0.6335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692033262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:25 Heat of formation + Delta-G solvation = -14.883938 kcal Electronic energy + Delta-G solvation = -17688.759449 eV Core-core repulsion = 14742.497036 eV Total energy + Delta-G solvation = -2946.262414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52501 -37.02399 -35.23790 -35.09754 -32.60667 -32.53472 -30.09619 -29.25368 -25.66765 -24.23850 -23.19954 -21.76055 -20.81701 -18.42791 -17.81098 -16.85992 -15.89136 -15.41141 -15.06021 -14.73606 -14.63048 -14.34978 -14.08646 -13.86684 -13.56883 -12.90599 -12.51790 -12.38300 -12.01572 -11.91866 -11.74355 -11.43613 -11.19926 -11.15252 -11.06182 -10.92024 -10.60323 -10.45398 -9.80232 -9.34712 -9.10610 -8.52296 -7.58716 -7.35482 -6.71561 -4.31116 1.16035 1.91017 2.29556 2.55254 2.99242 3.01208 3.07264 3.17318 3.74214 4.19629 4.42048 4.76183 4.87645 5.00143 5.09149 5.17561 5.29490 5.44862 5.48417 5.71602 5.82811 5.87762 5.99272 6.12771 6.22231 6.27185 6.41260 6.70433 6.80398 6.97376 7.06248 7.40966 7.51100 7.70970 8.70984 9.31516 10.43295 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.030073 B = 0.005308 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.854181 B = 5273.675681 C = 5937.342139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.477 4.477 3 S 1.404 4.596 4 O -0.886 6.886 5 N -0.852 5.852 6 C 0.364 3.636 7 C -0.258 4.258 8 C -0.063 4.063 9 C -0.204 4.204 10 C -0.048 4.048 11 C -0.224 4.224 12 C 0.190 3.810 13 O -0.155 6.155 14 C -0.398 4.398 15 H 0.100 0.900 16 C 0.045 3.955 17 N -0.846 5.846 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.273 1.273 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.164 0.836 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -2.513 -8.768 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.612 4.612 3 S 1.507 4.493 4 O -0.871 6.871 5 N -0.673 5.673 6 C 0.161 3.839 7 C -0.265 4.265 8 C -0.086 4.086 9 C -0.224 4.224 10 C -0.067 4.067 11 C -0.243 4.243 12 C 0.131 3.869 13 O -0.055 6.055 14 C -0.473 4.473 15 H 0.118 0.882 16 C -0.162 4.162 17 N -0.478 5.478 18 Si 0.770 3.230 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.198 1.198 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.099 0.901 27 H 0.181 0.819 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.924 -2.827 -7.867 12.976 hybrid contribution 0.955 0.158 1.219 1.556 sum -8.970 -2.670 -6.648 11.480 Atomic orbital electron populations 1.21283 0.92603 1.02403 1.02224 1.27843 1.02946 1.23607 1.06774 1.69778 0.87508 0.86215 1.05768 1.93129 1.82627 1.69002 1.42381 1.72533 1.27937 1.37075 1.29724 1.24194 0.99650 0.81599 0.78452 1.19416 0.99082 0.94156 1.13873 1.20929 0.92406 0.98494 0.96723 1.20548 1.01668 0.93251 1.06913 1.21015 0.93826 0.96545 0.95352 1.21270 0.97723 1.00156 1.05187 1.19233 0.86575 0.91924 0.89194 1.83878 1.26023 1.36083 1.59504 1.21529 0.98510 0.87911 1.39372 0.88236 1.25411 0.95290 0.99821 0.95721 1.70002 1.16311 1.33142 1.28300 0.85561 0.79353 0.79279 0.78776 1.18801 1.19926 1.19793 0.92197 0.92613 0.91512 0.87658 0.90106 0.81949 0.86231 0.86057 0.86442 0.84618 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.92 37.16 0.37 -1.08 16 2 C -0.48 -6.88 6.82 37.16 0.25 -6.62 16 3 S 1.40 24.74 8.87 -107.50 -0.95 23.78 16 4 O -0.89 -21.65 18.04 -35.23 -0.64 -22.29 16 5 N -0.85 -16.98 10.76 32.08 0.35 -16.63 16 6 C 0.36 7.16 10.72 -14.84 -0.16 7.00 16 7 C -0.26 -4.95 5.47 -104.87 -0.57 -5.52 16 8 C -0.06 -0.97 7.99 -39.19 -0.31 -1.28 16 9 C -0.20 -2.82 10.03 -39.60 -0.40 -3.21 16 10 C -0.05 -0.72 10.03 -39.53 -0.40 -1.12 16 11 C -0.22 -4.17 9.16 -39.44 -0.36 -4.53 16 12 C 0.19 4.08 6.66 -38.60 -0.26 3.83 16 13 O -0.16 -3.97 9.16 0.70 0.01 -3.96 16 14 C -0.40 -10.00 9.48 30.90 0.29 -9.71 16 15 H 0.10 2.26 5.21 -52.49 -0.27 1.99 16 16 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 17 N -0.85 -22.97 13.67 55.48 0.76 -22.21 16 18 Si 0.95 18.77 29.56 -169.99 -5.02 13.75 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 26 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.16 3.15 7.98 -52.49 -0.42 2.73 16 28 H 0.12 1.42 5.38 -29.88 -0.16 1.26 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.14 2.48 5.64 -52.48 -0.30 2.18 16 32 H 0.28 6.88 8.32 -40.82 -0.34 6.54 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -34.09 292.52 -5.98 -40.07 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.24 Total: 4.31 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.64 Total: -21.22 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 1.10 Total: -38.84 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.63 Total: -26.25 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 16 Polarization: 24.74 SS G_CDS: -0.95 Total: 23.78 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.09 -5.98 -40.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692033262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.182 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds