Wall clock time and date at job start Mon Mar 30 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47301 * 2 1 4 4 O 1.42096 * 109.46936 * 76.05441 * 3 2 1 5 5 N 1.65601 * 102.99935 * 185.11019 * 3 2 1 6 6 C 1.29443 * 120.00217 * 152.15714 * 5 3 2 7 7 C 1.47371 * 119.99661 * 351.21218 * 6 5 3 8 8 C 1.39674 * 120.19988 * 329.32373 * 7 6 5 9 9 C 1.37855 * 119.91274 * 180.27577 * 8 7 6 10 10 C 1.38557 * 120.32074 * 359.72592 * 9 8 7 11 11 C 1.38055 * 120.40342 * 359.97438 * 10 9 8 12 12 C 1.38792 * 120.08160 * 0.02562 * 11 10 9 13 13 O 1.35559 * 120.15965 * 180.02562 * 12 11 10 14 14 C 1.34806 * 117.00384 * 354.39361 * 13 12 11 15 15 H 1.08002 * 119.99730 * 5.07655 * 14 13 12 16 16 C 1.38685 * 120.00004 * 184.80744 * 14 13 12 17 17 N 1.31525 * 120.00282 * 355.22842 * 16 14 13 18 18 Si 1.86804 * 119.99702 * 175.22851 * 16 14 13 19 19 H 1.48493 * 109.47332 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47095 * 120.00041 * 18 16 14 21 21 H 1.48504 * 109.47083 * 240.00000 * 18 16 14 22 22 H 1.09003 * 109.47459 * 184.95333 * 1 2 3 23 23 H 1.08998 * 109.47197 * 304.95778 * 1 2 3 24 24 H 1.09004 * 109.47212 * 64.95503 * 1 2 3 25 25 H 1.09008 * 109.46750 * 239.99769 * 2 1 3 26 26 H 1.09001 * 109.47304 * 120.00310 * 2 1 3 27 27 H 1.07998 * 120.00472 * 171.21751 * 6 5 3 28 28 H 1.08001 * 120.04941 * 359.97430 * 8 7 6 29 29 H 1.07996 * 119.84001 * 179.73636 * 9 8 7 30 30 H 1.07993 * 119.79723 * 180.02562 * 10 9 8 31 31 H 1.08003 * 119.95879 * 180.02562 * 11 10 9 32 32 H 0.96998 * 120.00496 * 185.00345 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.9882 2.2644 1.3002 5 7 3.7741 1.5257 -0.1437 6 6 4.4835 2.4537 -0.7015 7 6 3.8197 3.5810 -1.3800 8 6 2.5766 3.4000 -1.9905 9 6 1.9636 4.4572 -2.6285 10 6 2.5720 5.7016 -2.6625 11 6 3.7978 5.8967 -2.0580 12 6 4.4299 4.8440 -1.4111 13 8 5.6332 5.0340 -0.8166 14 6 6.2175 6.2367 -0.9879 15 1 5.6911 7.0236 -1.5076 16 6 7.4924 6.4653 -0.4920 17 7 8.0940 5.5421 0.2260 18 14 8.3549 8.0844 -0.8439 19 1 7.4710 8.9474 -1.6679 20 1 8.6626 8.7700 0.4370 21 1 9.6173 7.8228 -1.5810 22 1 -0.3634 -1.0238 0.0887 23 1 -0.3633 0.5888 0.8422 24 1 -0.3634 0.4351 -0.9311 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.5618 2.4018 -0.6698 28 1 2.0984 2.4319 -1.9672 29 1 1.0044 4.3149 -3.1038 30 1 2.0840 6.5240 -3.1643 31 1 4.2654 6.8698 -2.0886 32 1 8.9543 5.7286 0.6335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692033262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:24 Heat of formation + Delta-G solvation = -40.256153 kcal Electronic energy + Delta-G solvation = -17689.859671 eV Core-core repulsion = 14742.497036 eV Total energy + Delta-G solvation = -2947.362636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03993 -38.57732 -36.91496 -36.61490 -34.37498 -33.60291 -31.49515 -30.70941 -27.42773 -25.62756 -24.37859 -23.21256 -22.26038 -20.03721 -19.36781 -18.37046 -17.35526 -16.96094 -16.47553 -16.23178 -15.99083 -15.83425 -15.50533 -15.37794 -14.93373 -14.39954 -13.94461 -13.72864 -13.57807 -13.27016 -13.05119 -12.75810 -12.69151 -12.54916 -12.42674 -12.19176 -12.08507 -11.86436 -11.41974 -10.89589 -10.83055 -9.90037 -9.09697 -8.86934 -8.51311 -6.20097 -0.29158 0.51385 0.87967 1.10827 1.38098 1.46102 1.56332 1.74749 2.14424 2.75976 2.95555 3.11207 3.29787 3.53429 3.95515 4.05154 4.12622 4.23765 4.39129 4.53890 4.57250 4.71557 4.87988 4.92456 4.98872 5.04119 5.12671 5.20649 5.44033 5.52038 5.67716 5.86874 6.02360 6.11256 6.91921 7.64375 8.69229 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.030073 B = 0.005308 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.854181 B = 5273.675681 C = 5937.342139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.465 4.465 3 S 1.436 4.564 4 O -0.959 6.959 5 N -0.873 5.873 6 C 0.361 3.639 7 C -0.270 4.270 8 C -0.067 4.067 9 C -0.173 4.173 10 C -0.036 4.036 11 C -0.243 4.243 12 C 0.158 3.842 13 O -0.213 6.213 14 C -0.415 4.415 15 H 0.114 0.886 16 C -0.017 4.017 17 N -0.913 5.913 18 Si 1.019 2.981 19 H -0.244 1.244 20 H -0.274 1.274 21 H -0.270 1.270 22 H 0.080 0.920 23 H 0.039 0.961 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.056 0.944 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.181 0.819 30 H 0.164 0.836 31 H 0.132 0.868 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 -2.484 -11.753 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.603 4.603 3 S 1.543 4.457 4 O -0.945 6.945 5 N -0.693 5.693 6 C 0.158 3.842 7 C -0.276 4.276 8 C -0.089 4.089 9 C -0.192 4.192 10 C -0.054 4.054 11 C -0.262 4.262 12 C 0.103 3.897 13 O -0.117 6.117 14 C -0.491 4.491 15 H 0.132 0.868 16 C -0.216 4.216 17 N -0.549 5.549 18 Si 0.838 3.162 19 H -0.167 1.167 20 H -0.200 1.200 21 H -0.195 1.195 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.125 0.875 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.198 0.802 30 H 0.181 0.819 31 H 0.149 0.851 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.757 -2.779 -10.889 17.764 hybrid contribution 1.697 -0.130 1.957 2.593 sum -12.060 -2.909 -8.932 15.287 Atomic orbital electron populations 1.21450 0.89756 1.04014 1.03837 1.27757 1.05354 1.19984 1.07241 1.68539 0.85503 0.88162 1.03494 1.93022 1.83427 1.72663 1.45435 1.72486 1.29252 1.37645 1.29878 1.24182 0.99500 0.82054 0.78442 1.19701 1.00692 0.93024 1.14202 1.21449 0.90755 1.01060 0.95615 1.21325 1.02808 0.91563 1.03489 1.21599 0.91911 0.98627 0.93299 1.21467 0.99506 0.99290 1.05961 1.19861 0.86023 0.93840 0.89976 1.83867 1.28338 1.36596 1.62851 1.22009 0.99031 0.88530 1.39507 0.86841 1.26622 0.95911 1.03658 0.95442 1.70153 1.17189 1.35913 1.31657 0.84514 0.78162 0.74851 0.78640 1.16669 1.19971 1.19496 0.90072 0.94143 0.87468 0.84511 0.92472 0.83365 0.82668 0.80165 0.81878 0.85079 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.92 71.98 0.71 -1.77 16 2 C -0.47 -12.08 6.82 71.98 0.49 -11.59 16 3 S 1.44 48.54 8.87 -56.49 -0.50 48.04 16 4 O -0.96 -47.42 18.04 -148.98 -2.69 -50.11 16 5 N -0.87 -35.12 10.76 -52.40 -0.56 -35.69 16 6 C 0.36 14.78 10.72 87.45 0.94 15.71 16 7 C -0.27 -10.31 5.47 -20.02 -0.11 -10.42 16 8 C -0.07 -1.80 7.99 22.53 0.18 -1.62 16 9 C -0.17 -3.72 10.03 22.26 0.22 -3.49 16 10 C -0.04 -0.90 10.03 22.30 0.22 -0.68 16 11 C -0.24 -8.79 9.16 22.36 0.20 -8.59 16 12 C 0.16 6.99 6.66 22.90 0.15 7.15 16 13 O -0.21 -11.67 9.16 -20.40 -0.19 -11.86 16 14 C -0.42 -22.12 9.48 67.93 0.64 -21.47 16 15 H 0.11 5.37 5.21 -2.91 -0.02 5.35 16 16 C -0.02 -0.91 5.49 84.85 0.47 -0.45 16 17 N -0.91 -53.59 13.67 21.62 0.30 -53.29 16 18 Si 1.02 40.09 29.56 68.60 2.03 42.11 16 19 H -0.24 -8.58 7.11 99.48 0.71 -7.88 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.15 6.35 7.98 -2.91 -0.02 6.33 16 28 H 0.16 2.95 5.38 -17.29 -0.09 2.86 16 29 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.13 4.77 5.64 -2.91 -0.02 4.75 16 32 H 0.27 14.85 8.32 -92.71 -0.77 14.08 16 Total: -1.00 -83.26 292.52 3.57 -79.69 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.06 Total: 18.31 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.13 Total: -37.21 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -0.27 Total: -88.98 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -2.88 Total: -61.97 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.50 Total: 48.04 kcal Total: -83.26 3.57 -79.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692033262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.437 kcal (2) G-P(sol) polarization free energy of solvation -83.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds