Wall clock time and date at job start Mon Mar 30 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.47284 * 2 1 4 4 O 1.42096 * 109.46633 * 70.94388 * 3 2 1 5 5 N 1.65600 * 103.00311 * 180.02562 * 3 2 1 6 6 C 1.29426 * 119.99903 * 180.02562 * 5 3 2 7 7 C 1.47431 * 119.99670 * 179.97438 * 6 5 3 8 8 C 1.39789 * 120.07980 * 359.72937 * 7 6 5 9 9 C 1.37692 * 119.91129 * 179.78469 * 8 7 6 10 10 C 1.39104 * 120.08288 * 0.46456 * 9 8 7 11 11 O 1.35607 * 119.91769 * 179.76259 * 10 9 8 12 12 C 1.34804 * 117.00319 * 174.47187 * 11 10 9 13 13 H 1.08003 * 120.00090 * 5.05226 * 12 11 10 14 14 C 1.38692 * 120.00292 * 185.06230 * 12 11 10 15 15 N 1.31527 * 120.00108 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00168 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47116 * 89.99435 * 16 14 12 18 18 H 1.48496 * 109.47201 * 209.99375 * 16 14 12 19 19 H 1.48506 * 109.46883 * 329.99618 * 16 14 12 20 20 C 1.39104 * 120.16487 * 359.78638 * 10 9 8 21 21 C 1.37683 * 120.08084 * 359.97438 * 20 10 9 22 22 H 1.08997 * 109.47350 * 59.99558 * 1 2 3 23 23 H 1.09003 * 109.46961 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46616 * 299.99731 * 1 2 3 25 25 H 1.09009 * 109.47308 * 240.00535 * 2 1 3 26 26 H 1.08998 * 109.48048 * 120.00186 * 2 1 3 27 27 H 1.07996 * 120.00009 * 0.02562 * 6 5 3 28 28 H 1.08001 * 120.04459 * 359.97438 * 8 7 6 29 29 H 1.08007 * 119.95580 * 180.24888 * 9 8 7 30 30 H 0.97000 * 119.99958 * 180.02562 * 15 14 12 31 31 H 1.08000 * 119.95770 * 179.97438 * 20 10 9 32 32 H 1.08002 * 120.03737 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8801 2.3025 1.2663 5 7 3.7801 1.5237 -0.0007 6 6 4.5494 2.5645 -0.0004 7 6 6.0143 2.3983 -0.0005 8 6 6.5741 1.1174 0.0048 9 6 7.9427 0.9662 0.0003 10 6 8.7680 2.0860 0.0002 11 8 10.1154 1.9332 0.0005 12 6 10.8583 3.0521 -0.1153 13 1 10.3794 4.0202 -0.1208 14 6 12.2376 2.9602 -0.2276 15 7 12.8209 1.7814 -0.2207 16 14 13.2670 4.5107 -0.3889 17 1 13.6575 4.9882 0.9619 18 1 14.4874 4.2144 -1.1812 19 1 12.4741 5.5620 -1.0755 20 6 8.2145 3.3622 0.0002 21 6 6.8468 3.5213 -0.0002 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8901 26 1 1.8935 -0.5138 0.8899 27 1 4.1182 3.5546 0.0008 28 1 5.9340 0.2476 0.0094 29 1 8.3760 -0.0231 0.0003 30 1 13.7856 1.7172 -0.2989 31 1 8.8583 4.2293 0.0005 32 1 6.4178 4.5124 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692037716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:28 Heat of formation + Delta-G solvation = -22.954262 kcal Electronic energy + Delta-G solvation = -16708.330443 eV Core-core repulsion = 13761.718074 eV Total energy + Delta-G solvation = -2946.612369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21370 -37.11051 -35.68359 -34.74921 -32.80907 -32.50210 -30.41125 -29.09593 -25.76240 -24.11766 -22.93240 -22.07919 -20.20975 -18.33512 -17.71260 -17.04073 -16.49036 -15.43979 -15.08371 -14.83169 -14.67585 -14.30812 -13.87659 -13.69344 -13.34013 -12.92398 -12.77879 -12.54254 -12.22415 -12.05594 -11.86078 -11.49567 -11.33163 -11.27161 -11.02423 -10.73941 -10.56109 -10.48194 -9.62098 -9.52126 -9.01676 -8.36359 -8.03267 -7.29072 -6.68171 -4.23496 1.08930 1.87237 2.16395 2.67727 2.84049 3.02475 3.04975 3.08282 3.79766 4.03342 4.49225 4.79136 4.86037 4.91007 4.92988 5.07190 5.21999 5.44083 5.63282 5.68946 5.71459 5.77960 5.90993 6.06073 6.20202 6.54064 6.70971 6.83931 7.01499 7.10187 7.23358 7.48224 7.63632 7.77169 8.76292 9.42772 10.48219 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.061637 B = 0.003170 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.165829 B = 8829.466686 C = 9192.077354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.448 4.448 3 S 1.390 4.610 4 O -0.901 6.901 5 N -0.844 5.844 6 C 0.335 3.665 7 C -0.212 4.212 8 C -0.005 4.005 9 C -0.210 4.210 10 C 0.176 3.824 11 O -0.160 6.160 12 C -0.393 4.393 13 H 0.099 0.901 14 C 0.042 3.958 15 N -0.850 5.850 16 Si 0.946 3.054 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.265 1.265 20 C -0.246 4.246 21 C -0.023 4.023 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.275 0.725 31 H 0.133 0.867 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 2.058 -5.102 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.585 4.585 3 S 1.496 4.504 4 O -0.886 6.886 5 N -0.669 5.669 6 C 0.134 3.866 7 C -0.218 4.218 8 C -0.025 4.025 9 C -0.229 4.229 10 C 0.118 3.882 11 O -0.060 6.060 12 C -0.469 4.469 13 H 0.116 0.884 14 C -0.165 4.165 15 N -0.483 5.483 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.266 4.266 21 C -0.044 4.044 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.022 1.660 -5.011 16.869 hybrid contribution 0.861 0.152 1.688 1.901 sum -15.161 1.811 -3.323 15.626 Atomic orbital electron populations 1.21330 0.92504 1.02846 1.02223 1.27539 1.02649 1.20775 1.07545 1.68041 0.84938 0.87692 1.09693 1.93156 1.82343 1.67742 1.45336 1.72068 1.23249 1.41822 1.29720 1.23568 0.92689 0.91731 0.78569 1.18466 0.90053 0.94146 1.19183 1.20883 0.93275 0.96452 0.91900 1.20225 0.92415 0.97338 1.12945 1.19640 0.84763 0.93278 0.90503 1.83924 1.11805 1.35161 1.75069 1.21502 0.88483 0.84878 1.52015 0.88392 1.25419 0.96098 0.99041 0.95926 1.70024 1.11301 1.23359 1.43570 0.85631 0.79028 0.79467 0.78908 1.19626 1.20032 1.18878 1.21062 0.94955 0.97569 1.12979 1.20907 0.92912 0.96893 0.93703 0.91523 0.91789 0.92574 0.86854 0.89797 0.88987 0.85589 0.86089 0.91519 0.84939 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.92 37.16 0.37 -0.76 16 2 C -0.45 -4.81 6.82 37.16 0.25 -4.55 16 3 S 1.39 16.63 13.81 -107.50 -1.48 15.14 16 4 O -0.90 -16.62 17.92 -35.23 -0.63 -17.25 16 5 N -0.84 -12.59 9.80 32.10 0.31 -12.28 16 6 C 0.34 4.90 10.32 -14.82 -0.15 4.75 16 7 C -0.21 -3.58 5.87 -104.99 -0.62 -4.20 16 8 C 0.00 -0.09 9.57 -39.20 -0.37 -0.46 16 9 C -0.21 -4.26 9.97 -39.46 -0.39 -4.66 16 10 C 0.18 3.98 6.65 -38.94 -0.26 3.72 16 11 O -0.16 -4.28 9.75 0.56 0.01 -4.28 16 12 C -0.39 -10.24 9.48 30.90 0.29 -9.94 16 13 H 0.10 2.32 5.19 -52.48 -0.27 2.04 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 15 N -0.85 -23.56 13.67 55.48 0.76 -22.80 16 16 Si 0.95 19.13 29.55 -169.99 -5.02 14.10 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.25 -4.87 9.15 -39.46 -0.36 -5.24 16 21 C -0.02 -0.39 9.78 -39.20 -0.38 -0.77 16 22 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.11 1.01 8.14 -51.92 -0.42 0.58 16 26 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 27 H 0.09 1.07 7.99 -52.49 -0.42 0.65 16 28 H 0.13 2.14 7.55 -52.49 -0.40 1.74 16 29 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.13 2.57 5.62 -52.49 -0.29 2.27 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -34.18 300.33 -6.73 -40.91 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.48 Total: 3.03 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.72 Total: -21.12 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 1.07 Total: -35.07 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.63 Total: -21.52 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 16.63 SS G_CDS: -1.48 Total: 15.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.18 -6.73 -40.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.958 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds