Wall clock time and date at job start Mon Mar 30 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.47284 * 2 1 4 4 O 1.42096 * 109.46633 * 70.94388 * 3 2 1 5 5 N 1.65600 * 103.00311 * 180.02562 * 3 2 1 6 6 C 1.29426 * 119.99903 * 180.02562 * 5 3 2 7 7 C 1.47431 * 119.99670 * 179.97438 * 6 5 3 8 8 C 1.39789 * 120.07980 * 359.72937 * 7 6 5 9 9 C 1.37692 * 119.91129 * 179.78469 * 8 7 6 10 10 C 1.39104 * 120.08288 * 0.46456 * 9 8 7 11 11 O 1.35607 * 119.91769 * 179.76259 * 10 9 8 12 12 C 1.34804 * 117.00319 * 174.47187 * 11 10 9 13 13 H 1.08003 * 120.00090 * 5.05226 * 12 11 10 14 14 C 1.38692 * 120.00292 * 185.06230 * 12 11 10 15 15 N 1.31527 * 120.00108 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00168 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47116 * 89.99435 * 16 14 12 18 18 H 1.48496 * 109.47201 * 209.99375 * 16 14 12 19 19 H 1.48506 * 109.46883 * 329.99618 * 16 14 12 20 20 C 1.39104 * 120.16487 * 359.78638 * 10 9 8 21 21 C 1.37683 * 120.08084 * 359.97438 * 20 10 9 22 22 H 1.08997 * 109.47350 * 59.99558 * 1 2 3 23 23 H 1.09003 * 109.46961 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46616 * 299.99731 * 1 2 3 25 25 H 1.09009 * 109.47308 * 240.00535 * 2 1 3 26 26 H 1.08998 * 109.48048 * 120.00186 * 2 1 3 27 27 H 1.07996 * 120.00009 * 0.02562 * 6 5 3 28 28 H 1.08001 * 120.04459 * 359.97438 * 8 7 6 29 29 H 1.08007 * 119.95580 * 180.24888 * 9 8 7 30 30 H 0.97000 * 119.99958 * 180.02562 * 15 14 12 31 31 H 1.08000 * 119.95770 * 179.97438 * 20 10 9 32 32 H 1.08002 * 120.03737 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8801 2.3025 1.2663 5 7 3.7801 1.5237 -0.0007 6 6 4.5494 2.5645 -0.0004 7 6 6.0143 2.3983 -0.0005 8 6 6.5741 1.1174 0.0048 9 6 7.9427 0.9662 0.0003 10 6 8.7680 2.0860 0.0002 11 8 10.1154 1.9332 0.0005 12 6 10.8583 3.0521 -0.1153 13 1 10.3794 4.0202 -0.1208 14 6 12.2376 2.9602 -0.2276 15 7 12.8209 1.7814 -0.2207 16 14 13.2670 4.5107 -0.3889 17 1 13.6575 4.9882 0.9619 18 1 14.4874 4.2144 -1.1812 19 1 12.4741 5.5620 -1.0755 20 6 8.2145 3.3622 0.0002 21 6 6.8468 3.5213 -0.0002 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8901 26 1 1.8935 -0.5138 0.8899 27 1 4.1182 3.5546 0.0008 28 1 5.9340 0.2476 0.0094 29 1 8.3760 -0.0231 0.0003 30 1 13.7856 1.7172 -0.2989 31 1 8.8583 4.2293 0.0005 32 1 6.4178 4.5124 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692037716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:28 Heat of formation + Delta-G solvation = -47.209999 kcal Electronic energy + Delta-G solvation = -16709.382251 eV Core-core repulsion = 13761.718074 eV Total energy + Delta-G solvation = -2947.664177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.84164 -38.65883 -36.97984 -36.08609 -34.31467 -33.60558 -31.94128 -30.61858 -27.55771 -25.20739 -24.12464 -23.60697 -21.62575 -19.97118 -19.07634 -18.57174 -17.61314 -16.82611 -16.28810 -16.17574 -15.99249 -15.71995 -15.62334 -15.15709 -14.50242 -14.44935 -14.10605 -13.72198 -13.57469 -13.38764 -13.04972 -12.82298 -12.79611 -12.52615 -12.29906 -12.12387 -12.10330 -11.71925 -11.20723 -10.85396 -10.74054 -9.86233 -9.27630 -8.79615 -8.51490 -6.18471 -0.22476 0.62415 0.82771 1.32365 1.38591 1.51215 1.56360 1.75614 2.16877 2.82265 2.99071 3.19568 3.41565 3.67352 4.02464 4.08824 4.13960 4.17787 4.36064 4.53152 4.57987 4.67776 4.91714 4.97951 5.02121 5.07886 5.19789 5.25289 5.53121 5.53649 5.63195 5.97963 6.08935 6.21808 6.92812 7.69160 8.70747 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.061637 B = 0.003170 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.165829 B = 8829.466686 C = 9192.077354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.447 4.447 3 S 1.455 4.545 4 O -0.958 6.958 5 N -0.862 5.862 6 C 0.336 3.664 7 C -0.195 4.195 8 C -0.007 4.007 9 C -0.222 4.222 10 C 0.144 3.856 11 O -0.219 6.219 12 C -0.416 4.416 13 H 0.113 0.887 14 C -0.020 4.020 15 N -0.916 5.916 16 Si 1.021 2.979 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.246 1.246 20 C -0.252 4.252 21 C -0.011 4.011 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.138 0.862 26 H 0.057 0.943 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.275 0.725 31 H 0.134 0.866 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.370 3.893 -5.960 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.586 4.586 3 S 1.563 4.437 4 O -0.944 6.944 5 N -0.684 5.684 6 C 0.133 3.867 7 C -0.201 4.201 8 C -0.027 4.027 9 C -0.241 4.241 10 C 0.090 3.910 11 O -0.124 6.124 12 C -0.491 4.491 13 H 0.130 0.870 14 C -0.219 4.219 15 N -0.553 5.553 16 Si 0.840 3.160 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.170 1.170 20 C -0.271 4.271 21 C -0.031 4.031 22 H 0.119 0.881 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.156 0.844 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.644 3.504 -5.868 20.799 hybrid contribution 1.309 -0.595 1.943 2.417 sum -18.335 2.909 -3.925 18.975 Atomic orbital electron populations 1.21446 0.90687 1.04079 1.03186 1.27566 1.04366 1.19123 1.07519 1.67304 0.81976 0.87543 1.06904 1.93047 1.82761 1.70508 1.48125 1.71926 1.25306 1.43259 1.27892 1.23840 0.91177 0.93631 0.78091 1.18913 0.92032 0.93540 1.15582 1.21077 0.92223 0.97975 0.91453 1.20375 0.93463 0.96827 1.13459 1.20164 0.84126 0.95243 0.91436 1.83911 1.13555 1.35929 1.78959 1.21993 0.89137 0.85481 1.52525 0.86990 1.26681 0.97200 1.02565 0.95440 1.70172 1.11477 1.26089 1.47539 0.84549 0.77037 0.75317 0.79127 1.18956 1.19850 1.16968 1.21246 0.96664 0.96365 1.12866 1.21347 0.91257 0.99203 0.91278 0.88088 0.90549 0.94168 0.84388 0.92384 0.84449 0.84375 0.86806 0.91613 0.84826 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.92 71.98 0.71 -1.15 16 2 C -0.45 -8.11 6.82 71.98 0.49 -7.62 16 3 S 1.45 29.44 13.81 -56.49 -0.78 28.66 16 4 O -0.96 -32.60 17.92 -148.98 -2.67 -35.27 16 5 N -0.86 -22.33 9.80 -52.37 -0.51 -22.84 16 6 C 0.34 8.23 10.32 87.47 0.90 9.13 16 7 C -0.20 -5.92 5.87 -20.11 -0.12 -6.03 16 8 C -0.01 -0.25 9.57 22.52 0.22 -0.04 16 9 C -0.22 -9.26 9.97 22.35 0.22 -9.04 16 10 C 0.14 6.75 6.65 22.69 0.15 6.90 16 11 O -0.22 -12.56 9.75 -20.90 -0.20 -12.77 16 12 C -0.42 -22.76 9.48 67.93 0.64 -22.11 16 13 H 0.11 5.45 5.19 -2.91 -0.02 5.44 16 14 C -0.02 -1.09 5.49 84.85 0.47 -0.63 16 15 N -0.92 -54.26 13.67 21.62 0.30 -53.96 16 16 Si 1.02 40.35 29.55 68.60 2.03 42.38 16 17 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 20 C -0.25 -9.80 9.15 22.35 0.20 -9.60 16 21 C -0.01 -0.32 9.78 22.51 0.22 -0.10 16 22 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.14 2.29 7.99 -2.91 -0.02 2.27 16 28 H 0.14 4.45 7.55 -2.91 -0.02 4.42 16 29 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.13 5.12 5.62 -2.91 -0.02 5.10 16 32 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -79.92 300.33 3.40 -76.52 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.13 Total: 17.56 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.11 Total: -40.29 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -0.22 Total: -76.80 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -2.87 Total: -48.04 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -0.78 Total: 28.66 kcal Total: -79.92 3.40 -76.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.314 kcal (2) G-P(sol) polarization free energy of solvation -79.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds