Wall clock time and date at job start Mon Mar 30 2020 05:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81404 * 109.47048 * 2 1 4 4 O 1.42102 * 109.46701 * 289.05343 * 3 2 1 5 5 N 1.65604 * 102.99617 * 180.02562 * 3 2 1 6 6 C 1.29435 * 119.99758 * 177.62014 * 5 3 2 7 7 C 1.47431 * 119.99699 * 19.53401 * 6 5 3 8 8 C 1.39790 * 120.07952 * 196.71163 * 7 6 5 9 9 C 1.37687 * 119.91647 * 179.71628 * 8 7 6 10 10 C 1.39109 * 120.08144 * 0.58274 * 9 8 7 11 11 O 1.35604 * 119.91897 * 179.69615 * 10 9 8 12 12 C 1.34801 * 117.00051 * 173.96389 * 11 10 9 13 13 H 1.08003 * 119.99935 * 5.09914 * 12 11 10 14 14 C 1.38692 * 120.00308 * 185.09128 * 12 11 10 15 15 N 1.31532 * 119.99700 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00360 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47140 * 90.00303 * 16 14 12 18 18 H 1.48500 * 109.47357 * 210.00136 * 16 14 12 19 19 H 1.48503 * 109.47369 * 330.00632 * 16 14 12 20 20 C 1.39109 * 120.16114 * 359.66865 * 10 9 8 21 21 C 1.37685 * 120.08462 * 0.04723 * 20 10 9 22 22 H 1.09004 * 109.47321 * 299.99933 * 1 2 3 23 23 H 1.09001 * 109.47364 * 60.00195 * 1 2 3 24 24 H 1.08994 * 109.47152 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47142 * 239.99366 * 2 1 3 26 26 H 1.09001 * 109.47364 * 119.99805 * 2 1 3 27 27 H 1.07991 * 120.00237 * 199.52983 * 6 5 3 28 28 H 1.08007 * 120.04221 * 359.97438 * 8 7 6 29 29 H 1.08000 * 119.95741 * 180.27140 * 9 8 7 30 30 H 0.96997 * 120.00217 * 179.97438 * 15 14 12 31 31 H 1.07999 * 119.95458 * 180.02562 * 20 10 9 32 32 H 1.07998 * 120.04116 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8801 2.3026 -1.2664 5 7 3.7801 1.5236 -0.0007 6 6 4.5494 2.5635 -0.0474 7 6 4.0219 3.8880 0.3281 8 6 4.7103 5.0469 -0.0420 9 6 4.2116 6.2824 0.3054 10 6 3.0306 6.3778 1.0342 11 8 2.5456 7.5960 1.3798 12 6 1.3365 7.6271 1.9750 13 1 0.8368 6.7045 2.2310 14 6 0.7343 8.8437 2.2590 15 7 1.3428 9.9673 1.9470 16 14 -0.9408 8.8868 3.0844 17 1 -0.7656 8.9116 4.5589 18 1 -1.6744 10.1035 2.6525 19 1 -1.7141 7.6793 2.6982 20 6 2.3455 5.2265 1.4087 21 6 2.8350 3.9878 1.0599 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.5775 2.4609 -0.3614 28 1 5.6301 4.9735 -0.6034 29 1 4.7407 7.1784 0.0160 30 1 0.9215 10.8183 2.1452 31 1 1.4287 5.3044 1.9742 32 1 2.3028 3.0944 1.3514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692037717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:30 Heat of formation + Delta-G solvation = -35.493872 kcal Electronic energy + Delta-G solvation = -17471.164123 eV Core-core repulsion = 14524.007996 eV Total energy + Delta-G solvation = -2947.156128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00031 -38.97068 -36.90887 -36.12358 -34.31328 -33.58679 -32.09745 -30.54974 -27.49578 -25.31231 -24.51496 -23.56483 -22.05494 -20.01651 -19.45036 -18.55033 -17.50593 -17.01570 -16.36839 -16.17188 -16.08929 -15.72549 -15.65169 -15.10743 -14.75493 -14.43788 -14.05244 -13.75423 -13.56257 -13.35794 -13.23104 -13.00360 -12.74829 -12.49503 -12.37362 -12.12463 -12.11158 -11.82963 -11.34241 -10.84662 -10.82751 -10.01161 -9.20753 -8.74225 -8.53210 -6.20019 -0.33544 0.38858 0.76404 1.38227 1.39645 1.52588 1.57058 1.77803 2.16282 2.75424 2.94239 3.09541 3.35565 3.54802 3.76091 3.96339 4.05142 4.13844 4.34736 4.46522 4.52775 4.70369 4.87368 4.89515 4.98147 5.03369 5.07362 5.16703 5.33167 5.38108 5.53836 5.93985 5.96561 6.06884 6.90812 7.63300 8.68074 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.005279 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.291966 B = 5302.613985 C = 6351.228885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.469 4.469 3 S 1.427 4.573 4 O -0.947 6.947 5 N -0.868 5.868 6 C 0.357 3.643 7 C -0.261 4.261 8 C -0.005 4.005 9 C -0.206 4.206 10 C 0.142 3.858 11 O -0.210 6.210 12 C -0.419 4.419 13 H 0.113 0.887 14 C -0.016 4.016 15 N -0.910 5.910 16 Si 1.017 2.983 17 H -0.259 1.259 18 H -0.275 1.275 19 H -0.249 1.249 20 C -0.233 4.233 21 C -0.063 4.063 22 H 0.092 0.908 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.135 0.865 27 H 0.202 0.798 28 H 0.176 0.824 29 H 0.132 0.868 30 H 0.276 0.724 31 H 0.141 0.859 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -14.683 2.558 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.606 4.606 3 S 1.534 4.466 4 O -0.933 6.933 5 N -0.688 5.688 6 C 0.155 3.845 7 C -0.267 4.267 8 C -0.025 4.025 9 C -0.225 4.225 10 C 0.088 3.912 11 O -0.113 6.113 12 C -0.494 4.494 13 H 0.130 0.870 14 C -0.215 4.215 15 N -0.546 5.546 16 Si 0.836 3.164 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.173 1.173 20 C -0.252 4.252 21 C -0.086 4.086 22 H 0.111 0.889 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.219 0.781 28 H 0.194 0.806 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.704 -14.433 2.458 14.740 hybrid contribution -0.382 -0.041 -1.396 1.448 sum 1.323 -14.474 1.062 14.573 Atomic orbital electron populations 1.21428 0.91315 1.03987 1.02782 1.27802 1.04242 1.21373 1.07206 1.68534 0.84577 0.86271 1.07176 1.93108 1.82329 1.70886 1.46959 1.72329 1.24745 1.40469 1.31255 1.24775 0.99730 0.83331 0.76666 1.20366 0.99902 0.96289 1.10128 1.21258 0.98512 0.88948 0.93780 1.20574 0.97132 0.99682 1.05100 1.20191 0.93700 0.85763 0.91527 1.83918 1.34495 1.25563 1.67347 1.22000 0.93129 0.95737 1.38579 0.86992 1.26634 1.04006 0.93349 0.97522 1.70151 1.40498 0.98547 1.45398 0.84601 0.74370 0.79095 0.78359 1.18358 1.19975 1.17270 1.21157 1.03949 0.91601 1.08497 1.21330 0.94060 0.96876 0.96317 0.88904 0.94504 0.90101 0.92060 0.84653 0.78126 0.80628 0.85054 0.91485 0.84163 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.92 71.98 0.71 -2.07 16 2 C -0.47 -11.17 6.82 71.98 0.49 -10.68 16 3 S 1.43 41.66 8.83 -56.49 -0.50 41.16 16 4 O -0.95 -40.53 17.67 -148.98 -2.63 -43.16 16 5 N -0.87 -24.51 10.77 -52.37 -0.56 -25.08 16 6 C 0.36 8.81 10.96 87.47 0.96 9.77 16 7 C -0.26 -7.79 5.53 -20.10 -0.11 -7.90 16 8 C -0.01 -0.15 9.78 22.52 0.22 0.07 16 9 C -0.21 -7.67 9.97 22.35 0.22 -7.45 16 10 C 0.14 6.42 6.65 22.69 0.15 6.57 16 11 O -0.21 -11.55 9.75 -20.83 -0.20 -11.75 16 12 C -0.42 -22.39 9.48 67.93 0.64 -21.74 16 13 H 0.11 5.34 5.19 -2.91 -0.02 5.32 16 14 C -0.02 -0.82 5.49 84.85 0.47 -0.35 16 15 N -0.91 -52.41 13.67 21.62 0.30 -52.12 16 16 Si 1.02 39.53 29.55 68.60 2.03 41.56 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 20 C -0.23 -9.15 9.15 22.35 0.20 -8.95 16 21 C -0.06 -2.06 8.15 22.51 0.18 -1.88 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.20 2.98 8.06 -2.92 -0.02 2.96 16 28 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.14 5.34 5.62 -2.91 -0.02 5.32 16 32 H 0.14 3.55 4.60 -21.73 -0.10 3.45 16 Total: -1.00 -77.98 292.08 3.62 -74.36 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.05 Total: 19.64 kcal Atomic # 6 Polarization: -48.76 SS G_CDS: 4.14 Total: -44.61 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -0.27 Total: -77.19 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -2.84 Total: -54.91 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: 41.66 SS G_CDS: -0.50 Total: 41.16 kcal Total: -77.98 3.62 -74.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.863 kcal (2) G-P(sol) polarization free energy of solvation -77.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds