Wall clock time and date at job start Mon Mar 30 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81393 * 109.47514 * 2 1 4 4 O 1.42097 * 109.46907 * 70.94299 * 3 2 1 5 5 N 1.65602 * 103.00086 * 180.02562 * 3 2 1 6 6 C 1.29425 * 119.99845 * 181.61650 * 5 3 2 7 7 C 1.47431 * 120.00335 * 340.77587 * 6 5 3 8 8 C 1.39783 * 120.08422 * 163.65954 * 7 6 5 9 9 C 1.37692 * 119.91858 * 179.76231 * 8 7 6 10 10 C 1.39107 * 120.07785 * 0.51640 * 9 8 7 11 11 O 1.35604 * 119.91939 * 179.76488 * 10 9 8 12 12 C 1.34806 * 117.00314 * 174.20358 * 11 10 9 13 13 H 1.07997 * 119.99664 * 5.12527 * 12 11 10 14 14 C 1.38689 * 120.00072 * 185.11707 * 12 11 10 15 15 N 1.31529 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47427 * 90.00488 * 16 14 12 18 18 H 1.48506 * 109.47268 * 210.00287 * 16 14 12 19 19 H 1.48496 * 109.47495 * 330.00282 * 16 14 12 20 20 C 1.39108 * 120.16556 * 359.73537 * 10 9 8 21 21 C 1.37689 * 120.08268 * 0.02562 * 20 10 9 22 22 H 1.08996 * 109.47703 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47048 * 300.00218 * 1 2 3 24 24 H 1.08996 * 109.47002 * 59.99840 * 1 2 3 25 25 H 1.09002 * 109.47048 * 239.99782 * 2 1 3 26 26 H 1.09005 * 109.46809 * 119.99977 * 2 1 3 27 27 H 1.08005 * 120.00105 * 160.77183 * 6 5 3 28 28 H 1.08002 * 120.04486 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.96054 * 180.27029 * 9 8 7 30 30 H 0.97006 * 120.00327 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.95851 * 179.97438 * 20 10 9 32 32 H 1.07998 * 120.04295 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8802 2.3025 1.2663 5 7 3.7802 1.5234 -0.0007 6 6 4.5495 2.5637 0.0307 7 6 4.0194 3.8845 -0.3541 8 6 4.7141 5.0467 -0.0066 9 6 4.2185 6.2783 -0.3720 10 6 3.0224 6.3673 -1.0767 11 8 2.5348 7.5821 -1.4307 12 6 1.4377 7.5967 -2.2139 13 1 0.9394 6.6714 -2.4625 14 6 0.9489 8.8000 -2.7004 15 7 1.5561 9.9269 -2.3979 16 14 -0.5717 8.8203 -3.7851 17 1 -1.7830 8.9565 -2.9370 18 1 -0.4940 9.9674 -4.7250 19 1 -0.6470 7.5532 -4.5558 20 6 2.3256 5.2132 -1.4196 21 6 2.8176 3.9780 -1.0619 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.5799 2.4643 0.3389 28 1 5.6407 4.9786 0.5440 29 1 4.7569 7.1763 -0.1077 30 1 1.2145 10.7685 -2.7385 31 1 1.3971 5.2862 -1.9664 32 1 2.2762 3.0824 -1.3289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692037718.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:32 Heat of formation + Delta-G solvation = -11.096836 kcal Electronic energy + Delta-G solvation = -17460.579165 eV Core-core repulsion = 14514.480972 eV Total energy + Delta-G solvation = -2946.098193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45687 -37.45657 -35.39835 -34.71479 -32.57257 -32.54680 -30.65357 -29.05269 -25.75393 -24.01881 -23.31304 -22.10017 -20.69255 -18.38475 -17.95290 -17.11116 -16.10825 -15.54666 -15.02737 -14.82450 -14.63571 -14.34150 -13.96485 -13.84122 -13.28989 -13.02131 -12.74751 -12.45660 -12.05380 -11.95454 -11.84391 -11.75065 -11.26646 -11.22288 -10.94595 -10.80400 -10.62070 -10.49838 -9.73439 -9.48091 -9.10349 -8.59094 -7.69169 -7.34707 -6.76402 -4.31427 1.00761 1.80661 2.11587 2.74084 2.99332 3.00717 3.04472 3.05552 3.73843 4.21694 4.32135 4.77346 4.82649 4.92376 5.03705 5.16330 5.17682 5.30800 5.44011 5.72141 5.85244 5.86135 5.96967 6.02898 6.11642 6.29959 6.47696 6.69016 6.77975 6.91530 7.09404 7.36719 7.43246 7.67544 8.67378 9.30831 10.39280 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.005180 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.689686 B = 5404.134154 C = 6405.239893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.483 4.483 3 S 1.420 4.580 4 O -0.884 6.884 5 N -0.864 5.864 6 C 0.348 3.652 7 C -0.270 4.270 8 C -0.018 4.018 9 C -0.193 4.193 10 C 0.172 3.828 11 O -0.153 6.153 12 C -0.394 4.394 13 H 0.101 0.899 14 C 0.043 3.957 15 N -0.845 5.845 16 Si 0.947 3.053 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.263 1.263 20 C -0.222 4.222 21 C -0.056 4.056 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.150 0.850 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.276 0.724 31 H 0.140 0.860 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -10.956 -2.007 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.617 4.617 3 S 1.524 4.476 4 O -0.869 6.869 5 N -0.685 5.685 6 C 0.147 3.853 7 C -0.276 4.276 8 C -0.039 4.039 9 C -0.213 4.213 10 C 0.113 3.887 11 O -0.052 6.052 12 C -0.469 4.469 13 H 0.118 0.882 14 C -0.164 4.164 15 N -0.477 5.477 16 Si 0.770 3.230 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.187 1.187 20 C -0.242 4.242 21 C -0.079 4.079 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.829 -10.657 -1.912 10.859 hybrid contribution -0.381 -0.624 1.071 1.297 sum 0.448 -11.281 -0.841 11.321 Atomic orbital electron populations 1.21284 0.92761 1.02373 1.02291 1.27939 1.02921 1.24384 1.06500 1.69499 0.84711 0.84651 1.08750 1.93188 1.81097 1.68065 1.44571 1.72241 1.24937 1.40080 1.31275 1.24080 0.97850 0.84979 0.78387 1.19794 1.00477 0.94699 1.12665 1.20723 0.97562 0.90662 0.94906 1.20231 0.96660 0.97977 1.06426 1.19568 0.91605 0.85713 0.91768 1.83926 1.40856 1.23565 1.56890 1.21552 1.02851 0.95560 1.26975 0.88184 1.25447 0.99503 0.93996 0.97454 1.70019 1.38598 0.98243 1.40837 0.85614 0.79436 0.78919 0.79025 1.19488 1.19953 1.18702 1.21008 1.03380 0.91248 1.08532 1.20910 0.93581 0.96612 0.96814 0.92258 0.92592 0.91586 0.87657 0.90436 0.83274 0.85660 0.85523 0.91346 0.84263 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.92 37.16 0.37 -1.14 16 2 C -0.48 -6.57 6.82 37.16 0.25 -6.32 16 3 S 1.42 22.61 8.76 -107.50 -0.94 21.67 16 4 O -0.88 -19.45 17.70 -35.23 -0.62 -20.07 16 5 N -0.86 -14.03 10.77 32.10 0.35 -13.68 16 6 C 0.35 5.17 10.98 -14.82 -0.16 5.01 16 7 C -0.27 -4.49 5.56 -104.99 -0.58 -5.07 16 8 C -0.02 -0.29 9.78 -39.20 -0.38 -0.67 16 9 C -0.19 -3.63 9.97 -39.46 -0.39 -4.03 16 10 C 0.17 3.74 6.65 -38.94 -0.26 3.48 16 11 O -0.15 -3.95 9.75 0.57 0.01 -3.94 16 12 C -0.39 -9.90 9.48 30.90 0.29 -9.61 16 13 H 0.10 2.26 5.19 -52.49 -0.27 1.99 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 15 N -0.85 -22.67 13.67 55.48 0.76 -21.91 16 16 Si 0.95 18.49 29.55 -169.99 -5.02 13.47 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 C -0.22 -4.33 9.15 -39.46 -0.36 -4.69 16 21 C -0.06 -0.97 8.16 -39.20 -0.32 -1.29 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.10 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.14 2.58 5.62 -52.49 -0.30 2.28 16 32 H 0.11 1.53 4.48 -21.99 -0.10 1.43 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -33.19 291.98 -5.91 -39.09 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.18 Total: 4.31 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.64 Total: -23.33 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 1.10 Total: -35.59 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.62 Total: -24.01 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 22.61 SS G_CDS: -0.94 Total: 21.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.19 -5.91 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037718.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.996 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds