Wall clock time and date at job start Mon Mar 30 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81393 * 109.47514 * 2 1 4 4 O 1.42097 * 109.46907 * 70.94299 * 3 2 1 5 5 N 1.65602 * 103.00086 * 180.02562 * 3 2 1 6 6 C 1.29425 * 119.99845 * 181.61650 * 5 3 2 7 7 C 1.47431 * 120.00335 * 340.77587 * 6 5 3 8 8 C 1.39783 * 120.08422 * 163.65954 * 7 6 5 9 9 C 1.37692 * 119.91858 * 179.76231 * 8 7 6 10 10 C 1.39107 * 120.07785 * 0.51640 * 9 8 7 11 11 O 1.35604 * 119.91939 * 179.76488 * 10 9 8 12 12 C 1.34806 * 117.00314 * 174.20358 * 11 10 9 13 13 H 1.07997 * 119.99664 * 5.12527 * 12 11 10 14 14 C 1.38689 * 120.00072 * 185.11707 * 12 11 10 15 15 N 1.31529 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47427 * 90.00488 * 16 14 12 18 18 H 1.48506 * 109.47268 * 210.00287 * 16 14 12 19 19 H 1.48496 * 109.47495 * 330.00282 * 16 14 12 20 20 C 1.39108 * 120.16556 * 359.73537 * 10 9 8 21 21 C 1.37689 * 120.08268 * 0.02562 * 20 10 9 22 22 H 1.08996 * 109.47703 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47048 * 300.00218 * 1 2 3 24 24 H 1.08996 * 109.47002 * 59.99840 * 1 2 3 25 25 H 1.09002 * 109.47048 * 239.99782 * 2 1 3 26 26 H 1.09005 * 109.46809 * 119.99977 * 2 1 3 27 27 H 1.08005 * 120.00105 * 160.77183 * 6 5 3 28 28 H 1.08002 * 120.04486 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.96054 * 180.27029 * 9 8 7 30 30 H 0.97006 * 120.00327 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.95851 * 179.97438 * 20 10 9 32 32 H 1.07998 * 120.04295 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8802 2.3025 1.2663 5 7 3.7802 1.5234 -0.0007 6 6 4.5495 2.5637 0.0307 7 6 4.0194 3.8845 -0.3541 8 6 4.7141 5.0467 -0.0066 9 6 4.2185 6.2783 -0.3720 10 6 3.0224 6.3673 -1.0767 11 8 2.5348 7.5821 -1.4307 12 6 1.4377 7.5967 -2.2139 13 1 0.9394 6.6714 -2.4625 14 6 0.9489 8.8000 -2.7004 15 7 1.5561 9.9269 -2.3979 16 14 -0.5717 8.8203 -3.7851 17 1 -1.7830 8.9565 -2.9370 18 1 -0.4940 9.9674 -4.7250 19 1 -0.6470 7.5532 -4.5558 20 6 2.3256 5.2132 -1.4196 21 6 2.8176 3.9780 -1.0619 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.5799 2.4643 0.3389 28 1 5.6407 4.9786 0.5440 29 1 4.7569 7.1763 -0.1077 30 1 1.2145 10.7685 -2.7385 31 1 1.3971 5.2862 -1.9664 32 1 2.2762 3.0824 -1.3289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692037718.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:31 Heat of formation + Delta-G solvation = -34.984419 kcal Electronic energy + Delta-G solvation = -17461.615008 eV Core-core repulsion = 14514.480972 eV Total energy + Delta-G solvation = -2947.134036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00280 -38.97432 -36.90857 -36.12922 -34.31149 -33.58624 -32.10242 -30.55074 -27.49456 -25.31445 -24.52408 -23.56525 -22.05656 -20.01561 -19.46564 -18.54994 -17.50700 -17.03274 -16.37875 -16.17459 -16.08487 -15.75548 -15.60388 -15.10482 -14.75742 -14.46205 -14.04638 -13.73874 -13.55975 -13.35671 -13.23212 -13.00484 -12.75950 -12.46398 -12.38033 -12.13168 -12.09428 -11.84576 -11.34090 -10.85221 -10.82122 -10.01280 -9.20057 -8.74363 -8.52904 -6.19746 -0.33678 0.38921 0.76436 1.38040 1.40318 1.52983 1.57574 1.77551 2.16759 2.75537 2.93959 3.10365 3.34892 3.54418 3.75435 3.96079 4.05214 4.13897 4.34523 4.46387 4.52766 4.70361 4.87456 4.89556 4.98221 5.03058 5.07638 5.16681 5.33145 5.37978 5.53857 5.94209 5.96514 6.06986 6.91063 7.63440 8.68373 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.005180 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.689686 B = 5404.134154 C = 6405.239893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.471 4.471 3 S 1.428 4.572 4 O -0.947 6.947 5 N -0.868 5.868 6 C 0.357 3.643 7 C -0.261 4.261 8 C -0.005 4.005 9 C -0.206 4.206 10 C 0.143 3.857 11 O -0.210 6.210 12 C -0.419 4.419 13 H 0.113 0.887 14 C -0.015 4.015 15 N -0.910 5.910 16 Si 1.017 2.983 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.245 1.245 20 C -0.232 4.232 21 C -0.064 4.064 22 H 0.080 0.920 23 H 0.036 0.964 24 H 0.092 0.908 25 H 0.135 0.865 26 H 0.060 0.940 27 H 0.203 0.797 28 H 0.177 0.823 29 H 0.132 0.868 30 H 0.276 0.724 31 H 0.141 0.859 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -14.589 -2.255 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.607 4.607 3 S 1.535 4.465 4 O -0.933 6.933 5 N -0.688 5.688 6 C 0.155 3.845 7 C -0.267 4.267 8 C -0.024 4.024 9 C -0.225 4.225 10 C 0.088 3.912 11 O -0.113 6.113 12 C -0.494 4.494 13 H 0.131 0.869 14 C -0.215 4.215 15 N -0.546 5.546 16 Si 0.836 3.164 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.168 1.168 20 C -0.252 4.252 21 C -0.086 4.086 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.111 0.889 25 H 0.153 0.847 26 H 0.079 0.921 27 H 0.219 0.781 28 H 0.194 0.806 29 H 0.150 0.850 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.610 -14.343 -2.142 14.591 hybrid contribution -0.362 -0.047 1.337 1.386 sum 1.249 -14.390 -0.805 14.466 Atomic orbital electron populations 1.21426 0.91306 1.03979 1.02786 1.27813 1.04264 1.21474 1.07181 1.68555 0.84620 0.86202 1.07075 1.93105 1.82319 1.70916 1.46957 1.72332 1.24784 1.40336 1.31373 1.24780 0.99797 0.83256 0.76684 1.20368 0.99610 0.96322 1.10411 1.21260 0.98758 0.88939 0.93486 1.20577 0.95991 0.99746 1.06172 1.20195 0.92943 0.85706 0.92310 1.83920 1.42334 1.25411 1.59665 1.22007 1.03381 0.96373 1.27682 0.86946 1.26638 1.02687 0.93383 0.98791 1.70154 1.41404 0.98940 1.44091 0.84595 0.75154 0.79520 0.77118 1.19071 1.19739 1.16787 1.21153 1.03590 0.91616 1.08824 1.21342 0.94115 0.96857 0.96325 0.90123 0.94483 0.88905 0.84696 0.92063 0.78098 0.80588 0.85027 0.91480 0.84160 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.92 71.98 0.71 -2.06 16 2 C -0.47 -11.22 6.82 71.98 0.49 -10.73 16 3 S 1.43 41.67 8.76 -56.49 -0.49 41.17 16 4 O -0.95 -40.40 17.70 -148.98 -2.64 -43.03 16 5 N -0.87 -24.56 10.77 -52.36 -0.56 -25.12 16 6 C 0.36 8.80 10.98 87.47 0.96 9.76 16 7 C -0.26 -7.78 5.56 -20.11 -0.11 -7.89 16 8 C 0.00 -0.13 9.78 22.51 0.22 0.09 16 9 C -0.21 -7.64 9.97 22.35 0.22 -7.42 16 10 C 0.14 6.42 6.65 22.69 0.15 6.57 16 11 O -0.21 -11.53 9.75 -20.89 -0.20 -11.74 16 12 C -0.42 -22.29 9.48 67.93 0.64 -21.64 16 13 H 0.11 5.33 5.19 -2.91 -0.02 5.31 16 14 C -0.02 -0.81 5.49 84.85 0.47 -0.34 16 15 N -0.91 -52.22 13.67 21.62 0.30 -51.93 16 16 Si 1.02 39.25 29.55 68.60 2.03 41.28 16 17 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.24 -8.53 7.11 99.48 0.71 -7.82 16 20 C -0.23 -9.14 9.15 22.35 0.20 -8.93 16 21 C -0.06 -2.08 8.16 22.52 0.18 -1.90 16 22 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.20 2.98 8.06 -2.91 -0.02 2.95 16 28 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.28 14.51 8.31 -92.70 -0.77 13.74 16 31 H 0.14 5.34 5.62 -2.91 -0.02 5.32 16 32 H 0.14 3.54 4.48 -22.31 -0.10 3.44 16 Total: -1.00 -77.73 291.98 3.62 -74.11 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.05 Total: 19.74 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 4.15 Total: -44.49 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -0.27 Total: -77.05 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -2.84 Total: -54.77 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Atomic # 16 Polarization: 41.67 SS G_CDS: -0.49 Total: 41.17 kcal Total: -77.73 3.62 -74.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037718.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.128 kcal (2) G-P(sol) polarization free energy of solvation -77.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds