Wall clock time and date at job start Mon Mar 30 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47159 * 120.98164 * 89.99500 * 12 9 7 14 14 C 1.53297 * 108.37997 * 129.44405 * 13 12 9 15 15 O 1.42963 * 109.22350 * 52.30390 * 14 13 12 16 16 C 1.42963 * 114.16617 * 297.41812 * 15 14 13 17 17 H 1.09000 * 109.51219 * 302.60638 * 16 15 14 18 18 C 1.52999 * 109.51198 * 182.50222 * 16 15 14 19 19 C 1.52999 * 109.46828 * 65.00024 * 18 16 15 20 20 F 1.39901 * 109.46935 * 179.97438 * 19 18 16 21 21 C 1.47149 * 120.98139 * 269.72249 * 12 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.68397 * 249.17055 * 13 12 9 24 24 H 1.09004 * 109.67782 * 9.72716 * 13 12 9 25 25 H 1.08999 * 109.50951 * 172.22770 * 14 13 12 26 26 H 1.09002 * 109.51264 * 292.33052 * 14 13 12 27 27 H 1.09001 * 109.47421 * 185.00072 * 18 16 15 28 28 H 1.08999 * 109.47279 * 305.00534 * 18 16 15 29 29 H 1.08998 * 109.47654 * 299.99646 * 19 18 16 30 30 H 1.09005 * 109.47445 * 60.00187 * 19 18 16 31 31 H 1.09004 * 109.67973 * 350.27695 * 21 12 9 32 32 H 1.08998 * 109.68685 * 110.83012 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.7628 -4.4914 1.2611 14 6 2.6454 -6.0187 1.1999 15 8 3.2626 -6.4904 -0.0003 16 6 2.6450 -6.0190 -1.2004 17 1 1.5931 -6.3045 -1.2049 18 6 3.3470 -6.6348 -2.4123 19 6 3.1286 -8.1491 -2.4132 20 9 3.7700 -8.7122 -3.5217 21 6 2.7582 -4.4956 -1.2621 22 1 -0.4850 0.8401 0.0004 23 1 3.8077 -4.2083 1.3879 24 1 2.1749 -4.1113 2.0966 25 1 3.1458 -6.4571 2.0632 26 1 1.5933 -6.3034 1.2053 27 1 2.9351 -6.2078 -3.3267 28 1 4.4148 -6.4218 -2.3608 29 1 3.5406 -8.5762 -1.4989 30 1 2.0608 -8.3622 -2.4647 31 1 2.1673 -4.1182 -2.0967 32 1 3.8027 -4.2129 -1.3937 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700575151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:42 Heat of formation + Delta-G solvation = -193.556869 kcal Electronic energy + Delta-G solvation = -19228.778375 eV Core-core repulsion = 15843.998897 eV Total energy + Delta-G solvation = -3384.779478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.61740 -39.21003 -35.42729 -34.38647 -34.05309 -33.63440 -33.10387 -29.53509 -26.57118 -26.12371 -23.93412 -22.11660 -20.74101 -18.82610 -17.49933 -16.81767 -16.53307 -15.95998 -15.79131 -15.36702 -15.18311 -14.86108 -14.42740 -14.19758 -14.09818 -13.53746 -13.34123 -12.61804 -12.18642 -12.05146 -11.59409 -11.41222 -11.27026 -11.22240 -11.03904 -10.91918 -10.74257 -10.65903 -10.39330 -10.20752 -10.20094 -9.77048 -9.28807 -8.98708 -8.21823 -6.75055 -5.38140 2.12555 3.05322 3.09716 3.15218 3.76856 3.99877 4.32781 4.47371 4.59103 4.76228 4.88021 5.07509 5.15892 5.26165 5.36745 5.40747 5.52073 5.68243 5.74473 5.76161 5.83906 5.94442 6.02130 6.09270 6.24128 6.27495 6.65925 7.24199 7.27066 7.40971 7.91470 8.83425 10.18572 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.032568 B = 0.005512 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.524914 B = 5078.498325 C = 5324.411911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.002 7.002 11 O -1.002 7.002 12 N -1.014 6.014 13 C 0.087 3.913 14 C 0.052 3.948 15 O -0.381 6.381 16 C 0.080 3.920 17 H 0.066 0.934 18 C -0.143 4.143 19 C 0.064 3.936 20 F -0.223 7.223 21 C 0.096 3.904 22 H 0.292 0.708 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -10.687 -0.874 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.992 6.992 11 O -0.992 6.992 12 N -0.850 5.850 13 C -0.039 4.039 14 C -0.027 4.027 15 O -0.300 6.300 16 C 0.021 3.979 17 H 0.084 0.916 18 C -0.182 4.182 19 C 0.009 3.991 20 F -0.204 7.204 21 C -0.030 4.030 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.687 -10.875 -0.894 12.305 hybrid contribution 0.811 1.469 0.037 1.678 sum 6.498 -9.406 -0.857 11.465 Atomic orbital electron populations 1.69884 1.06787 1.30936 1.39949 1.24767 0.94494 1.00859 0.88443 0.86177 0.79872 0.79556 0.79826 1.20049 1.18828 1.18831 1.30560 1.06102 1.11707 1.67014 0.87987 1.00561 0.72064 0.72996 0.72840 1.93349 1.72678 1.87515 1.45692 1.93348 1.72652 1.87514 1.45715 1.58333 1.62575 1.54559 1.09516 1.21926 1.00543 0.93883 0.87541 1.22944 0.98180 0.94263 0.87273 1.87850 1.57158 1.71468 1.13557 1.22275 0.96735 0.94048 0.84884 0.91599 1.22153 1.03273 0.94934 0.97801 1.21969 0.97504 0.93282 0.86357 1.92748 1.84340 1.86702 1.56639 1.21791 1.00788 0.92722 0.87742 0.89755 0.91440 0.87941 0.88064 0.92739 0.88899 0.89606 0.89997 0.90904 0.87905 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.60 13.19 55.43 0.73 -23.87 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -1.02 -27.80 9.75 30.60 0.30 -27.50 16 8 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 9 S 2.71 70.65 5.03 -107.50 -0.54 70.11 16 10 O -1.00 -28.43 16.64 -57.17 -0.95 -29.38 16 11 O -1.00 -28.40 16.63 -57.17 -0.95 -29.36 16 12 N -1.01 -20.16 3.35 -113.29 -0.38 -20.54 16 13 C 0.09 1.45 6.71 -3.53 -0.02 1.42 16 14 C 0.05 0.70 6.98 37.31 0.26 0.96 16 15 O -0.38 -5.35 9.92 -35.23 -0.35 -5.70 16 16 C 0.08 1.12 2.76 -26.79 -0.07 1.04 16 17 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.14 -1.62 5.38 -26.73 -0.14 -1.77 16 19 C 0.06 0.67 7.45 37.16 0.28 0.95 16 20 F -0.22 -2.77 17.36 2.25 0.04 -2.73 16 21 C 0.10 1.61 5.98 -3.75 -0.02 1.59 16 22 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.10 1.77 6.94 -51.93 -0.36 1.41 16 25 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.82 7.82 -51.93 -0.41 0.42 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.80 6.94 -51.93 -0.36 1.44 16 32 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -34.04 286.42 -6.69 -40.73 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.05 Total: 0.83 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 0.47 Total: -19.74 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.35 Total: -44.41 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -2.25 Total: -64.44 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 70.65 SS G_CDS: -0.54 Total: 70.11 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.04 -6.69 -40.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700575151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.830 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds