Wall clock time and date at job start Mon Mar 30 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47159 * 120.98164 * 89.99500 * 12 9 7 14 14 C 1.53297 * 108.37997 * 129.44405 * 13 12 9 15 15 O 1.42963 * 109.22350 * 52.30390 * 14 13 12 16 16 C 1.42963 * 114.16617 * 297.41812 * 15 14 13 17 17 H 1.09000 * 109.51219 * 302.60638 * 16 15 14 18 18 C 1.52999 * 109.51198 * 182.50222 * 16 15 14 19 19 C 1.52999 * 109.46828 * 65.00024 * 18 16 15 20 20 F 1.39901 * 109.46935 * 179.97438 * 19 18 16 21 21 C 1.47149 * 120.98139 * 269.72249 * 12 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.68397 * 249.17055 * 13 12 9 24 24 H 1.09004 * 109.67782 * 9.72716 * 13 12 9 25 25 H 1.08999 * 109.50951 * 172.22770 * 14 13 12 26 26 H 1.09002 * 109.51264 * 292.33052 * 14 13 12 27 27 H 1.09001 * 109.47421 * 185.00072 * 18 16 15 28 28 H 1.08999 * 109.47279 * 305.00534 * 18 16 15 29 29 H 1.08998 * 109.47654 * 299.99646 * 19 18 16 30 30 H 1.09005 * 109.47445 * 60.00187 * 19 18 16 31 31 H 1.09004 * 109.67973 * 350.27695 * 21 12 9 32 32 H 1.08998 * 109.68685 * 110.83012 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.7628 -4.4914 1.2611 14 6 2.6454 -6.0187 1.1999 15 8 3.2626 -6.4904 -0.0003 16 6 2.6450 -6.0190 -1.2004 17 1 1.5931 -6.3045 -1.2049 18 6 3.3470 -6.6348 -2.4123 19 6 3.1286 -8.1491 -2.4132 20 9 3.7700 -8.7122 -3.5217 21 6 2.7582 -4.4956 -1.2621 22 1 -0.4850 0.8401 0.0004 23 1 3.8077 -4.2083 1.3879 24 1 2.1749 -4.1113 2.0966 25 1 3.1458 -6.4571 2.0632 26 1 1.5933 -6.3034 1.2053 27 1 2.9351 -6.2078 -3.3267 28 1 4.4148 -6.4218 -2.3608 29 1 3.5406 -8.5762 -1.4989 30 1 2.0608 -8.3622 -2.4647 31 1 2.1673 -4.1182 -2.0967 32 1 3.8027 -4.2129 -1.3937 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700575151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:42 Heat of formation + Delta-G solvation = -220.075503 kcal Electronic energy + Delta-G solvation = -19229.928309 eV Core-core repulsion = 15843.998897 eV Total energy + Delta-G solvation = -3385.929412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.52002 -40.40415 -37.54626 -36.21660 -35.78493 -35.15145 -34.68838 -30.66113 -28.32373 -27.74855 -25.08839 -23.21091 -21.94209 -20.80549 -19.21359 -18.46160 -17.85275 -17.29179 -16.98217 -16.80298 -16.46498 -16.16469 -16.01698 -15.59540 -15.48175 -15.02708 -14.87955 -14.00487 -13.61527 -13.42908 -13.36351 -13.02750 -12.89493 -12.79714 -12.57068 -12.35556 -12.34534 -12.19760 -12.02748 -11.62420 -11.38673 -11.26680 -11.15725 -10.97168 -9.70492 -8.77699 -7.52870 0.20594 1.32130 1.34019 1.47432 2.17636 2.54247 2.65883 2.73135 3.41437 3.71190 3.83423 3.93646 3.98529 4.04725 4.15566 4.18472 4.34203 4.34812 4.47694 4.53397 4.70273 4.73141 4.83556 4.88661 5.00186 5.14792 5.20523 5.27924 5.81008 5.85649 6.12000 6.74403 8.16992 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.032568 B = 0.005512 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.524914 B = 5078.498325 C = 5324.411911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.250 1.250 6 H -0.251 1.251 7 C -1.043 5.043 8 H 0.117 0.883 9 S 2.718 3.282 10 O -1.037 7.037 11 O -1.037 7.037 12 N -1.013 6.013 13 C 0.076 3.924 14 C 0.054 3.946 15 O -0.377 6.377 16 C 0.085 3.915 17 H 0.064 0.936 18 C -0.138 4.138 19 C 0.065 3.935 20 F -0.233 7.233 21 C 0.086 3.914 22 H 0.300 0.700 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -11.068 -0.774 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.174 1.174 6 H -0.175 1.175 7 C -1.177 5.177 8 H 0.135 0.865 9 S 2.821 3.179 10 O -1.027 7.027 11 O -1.027 7.027 12 N -0.852 5.852 13 C -0.049 4.049 14 C -0.024 4.024 15 O -0.295 6.295 16 C 0.025 3.975 17 H 0.082 0.918 18 C -0.176 4.176 19 C 0.010 3.990 20 F -0.215 7.215 21 C -0.039 4.039 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.158 0.842 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.629 -11.276 -0.793 13.638 hybrid contribution 0.232 1.505 0.020 1.523 sum 7.862 -9.772 -0.773 12.565 Atomic orbital electron populations 1.69975 1.08734 1.32485 1.41280 1.26028 0.95400 1.05372 0.87485 0.85162 0.78803 0.74505 0.80734 1.18652 1.17389 1.17464 1.30961 1.07067 1.12763 1.66873 0.86496 1.00026 0.72650 0.73641 0.71561 1.93291 1.74345 1.88241 1.46805 1.93289 1.74334 1.88236 1.46838 1.57832 1.61932 1.53446 1.11981 1.22269 1.01122 0.96006 0.85491 1.23064 0.98827 0.91982 0.88487 1.87871 1.57104 1.71044 1.13521 1.22245 0.97227 0.91969 0.86041 0.91841 1.22118 1.03305 0.95505 0.96698 1.22023 0.98310 0.92455 0.86199 1.92730 1.84642 1.86780 1.57301 1.22092 1.01273 0.94739 0.85838 0.89011 0.89444 0.89268 0.84188 0.93027 0.88217 0.89047 0.89201 0.89587 0.89307 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.98 13.19 21.45 0.28 -52.70 16 2 C 0.07 3.88 5.46 84.66 0.46 4.34 16 3 Si 0.99 40.88 29.54 68.60 2.03 42.90 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 7 C -1.04 -57.20 9.75 67.74 0.66 -56.53 16 8 H 0.12 5.81 7.81 -2.91 -0.02 5.79 16 9 S 2.72 144.69 5.03 -56.49 -0.28 144.41 16 10 O -1.04 -60.64 16.64 -128.00 -2.13 -62.77 16 11 O -1.04 -60.69 16.63 -128.00 -2.13 -62.82 16 12 N -1.01 -39.95 3.35 -512.35 -1.71 -41.67 16 13 C 0.08 2.43 6.71 86.35 0.58 3.01 16 14 C 0.05 1.34 6.98 72.08 0.50 1.85 16 15 O -0.38 -9.51 9.92 -148.98 -1.48 -10.99 16 16 C 0.08 2.22 2.76 30.56 0.08 2.30 16 17 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 18 C -0.14 -2.82 5.38 30.59 0.16 -2.65 16 19 C 0.06 1.21 7.45 71.98 0.54 1.74 16 20 F -0.23 -5.32 17.36 44.97 0.78 -4.54 16 21 C 0.09 2.82 5.98 86.22 0.52 3.33 16 22 H 0.30 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.09 3.07 6.94 -2.38 -0.02 3.06 16 25 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.55 7.82 -2.39 -0.02 1.53 16 30 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 3.14 6.94 -2.39 -0.02 3.12 16 32 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 Total: -1.00 -74.32 286.42 -0.02 -74.34 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.12 Total: 16.45 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 3.51 Total: -42.62 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -1.43 Total: -94.36 kcal Atomic # 8 Polarization: -130.85 SS G_CDS: -5.74 Total: -136.59 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 144.69 SS G_CDS: -0.28 Total: 144.41 kcal Total: -74.32 -0.02 -74.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700575151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.733 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds