Wall clock time and date at job start Mon Mar 30 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46748 * 300.00117 * 3 2 1 6 6 H 1.48498 * 109.47206 * 59.99794 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00046 * 179.97438 * 10 9 7 13 13 O 1.21443 * 119.99630 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99828 * 180.27751 * 14 12 10 16 16 C 1.50700 * 109.46769 * 179.72341 * 15 14 12 17 17 C 1.38238 * 120.40266 * 269.71913 * 16 15 14 18 18 N 1.31846 * 120.81623 * 179.68473 * 17 16 15 19 19 C 1.31869 * 121.75517 * 0.62925 * 18 17 16 20 20 C 1.38426 * 120.72380 * 359.66226 * 19 18 17 21 21 F 1.35096 * 120.44499 * 179.97438 * 20 19 18 22 22 C 1.38586 * 120.40723 * 90.00441 * 16 15 14 23 23 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 25 25 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 26 26 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 27 27 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 28 28 H 1.07999 * 119.59375 * 359.97438 * 17 16 15 29 29 H 1.07996 * 119.63936 * 179.67911 * 19 18 17 30 30 H 1.08006 * 120.79989 * 359.97076 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8854 2.3963 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3878 0.0016 10 6 2.0012 -3.5550 0.0026 11 8 3.2163 -3.5550 0.0022 12 6 1.2571 -4.8438 0.0044 13 8 0.0426 -4.8437 0.0053 14 7 1.9309 -6.0111 0.0049 15 6 1.1984 -7.2797 0.0004 16 6 2.1777 -8.4251 -0.0048 17 6 2.6270 -8.9560 -1.1995 18 7 3.4884 -9.9540 -1.2137 19 6 3.9452 -10.4923 -0.0999 20 6 3.5363 -10.0178 1.1345 21 9 4.0075 -10.5738 2.2720 22 6 2.6343 -8.9631 1.1880 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3877 0.0023 25 1 2.9009 -6.0110 0.0038 26 1 0.5724 -7.3409 0.8907 27 1 0.5710 -7.3340 -0.8892 28 1 2.2715 -8.5451 -2.1329 29 1 4.6462 -11.3122 -0.1514 30 1 2.2973 -8.5711 2.1363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700790876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:37 Heat of formation + Delta-G solvation = -82.712600 kcal Electronic energy + Delta-G solvation = -18797.210116 eV Core-core repulsion = 15314.086006 eV Total energy + Delta-G solvation = -3483.124110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.28167 -40.56569 -39.45010 -37.31027 -35.30420 -34.23666 -32.53684 -31.50860 -31.22975 -27.28910 -25.65614 -24.10213 -23.14645 -21.91668 -19.63318 -18.43976 -17.81324 -17.65369 -17.23023 -16.78707 -16.20296 -15.91781 -15.07537 -15.03097 -14.49684 -14.24662 -14.00334 -13.70354 -13.52283 -13.40914 -13.22289 -12.79294 -12.45876 -12.07118 -11.81679 -11.24909 -10.64973 -10.47556 -10.43458 -10.17330 -9.98030 -9.77907 -9.31083 -8.93094 -8.33957 -8.27800 -6.72247 -4.04304 0.48715 0.69637 2.34992 3.06213 3.10725 3.15332 3.22333 3.52311 3.64763 4.02790 4.05901 4.20671 4.25772 4.38769 4.53082 4.80394 4.95963 5.11300 5.16200 5.40827 5.51225 5.57223 5.79994 5.98707 6.23797 6.57213 7.26462 7.43477 7.58404 7.78209 8.24765 8.51807 8.90505 9.25897 9.79190 10.42498 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.003397 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.432908 B = 8239.639769 C = 8431.240804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.114 0.886 9 N -0.497 5.497 10 C 0.392 3.608 11 O -0.597 6.597 12 C 0.515 3.485 13 O -0.544 6.544 14 N -0.714 5.714 15 C 0.164 3.836 16 C -0.124 4.124 17 C 0.110 3.890 18 N -0.457 5.457 19 C 0.078 3.922 20 C 0.046 3.954 21 F -0.129 7.129 22 C -0.090 4.090 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.411 0.589 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -16.467 0.703 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.131 5.131 10 C 0.177 3.823 11 O -0.486 6.486 12 C 0.300 3.700 13 O -0.420 6.420 14 N -0.369 5.369 15 C 0.040 3.960 16 C -0.127 4.127 17 C -0.048 4.048 18 N -0.164 5.164 19 C -0.081 4.081 20 C 0.025 3.975 21 F -0.108 7.108 22 C -0.117 4.117 23 H 0.091 0.909 24 H 0.240 0.760 25 H 0.247 0.753 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.122 -16.664 -0.061 16.954 hybrid contribution 0.003 0.937 1.106 1.450 sum 3.125 -15.726 1.044 16.068 Atomic orbital electron populations 1.69487 1.06545 1.29366 1.45092 1.25605 0.95640 1.00537 0.95808 0.85658 0.79891 0.79915 0.78111 1.18676 1.20235 1.20246 1.19950 0.94044 0.81824 1.47792 0.86860 1.41572 1.10511 1.04224 1.56789 1.18880 0.87802 0.84109 0.91554 1.90593 1.12839 1.86517 1.58667 1.20745 0.87487 0.85739 0.76007 1.90703 1.13998 1.87999 1.49326 1.45697 1.11219 1.03970 1.76034 1.20104 0.91994 0.79846 1.04057 1.20891 0.99728 0.98681 0.93360 1.22924 0.92186 0.91577 0.98085 1.67809 1.09634 1.09502 1.29475 1.22989 0.99095 0.99766 0.86239 1.18802 0.98701 0.96369 0.83633 1.91538 1.86838 1.84027 1.48385 1.21694 0.95299 0.94319 1.00351 0.90890 0.75975 0.75260 0.90025 0.89674 0.81462 0.81472 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.80 13.03 55.53 0.72 -22.07 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 19.72 29.56 -169.99 -5.02 14.70 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.31 -8.26 9.67 -15.14 -0.15 -8.41 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -12.97 5.25 -11.59 -0.06 -13.03 16 10 C 0.39 9.58 7.82 -11.88 -0.09 9.49 16 11 O -0.60 -15.67 16.03 5.36 0.09 -15.58 16 12 C 0.52 10.57 7.87 -11.88 -0.09 10.48 16 13 O -0.54 -12.01 16.47 5.42 0.09 -11.92 16 14 N -0.71 -11.21 5.54 -62.11 -0.34 -11.55 16 15 C 0.16 1.94 5.82 -5.19 -0.03 1.91 16 16 C -0.12 -1.25 5.26 -104.49 -0.55 -1.80 16 17 C 0.11 1.10 10.86 -17.55 -0.19 0.91 16 18 N -0.46 -4.88 10.36 -13.20 -0.14 -5.02 16 19 C 0.08 0.72 11.17 -17.47 -0.20 0.53 16 20 C 0.05 0.45 7.35 -39.27 -0.29 0.16 16 21 F -0.13 -1.30 17.28 2.25 0.04 -1.26 16 22 C -0.09 -0.87 9.85 -39.21 -0.39 -1.25 16 23 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 24 H 0.40 10.62 7.35 -40.82 -0.30 10.32 16 25 H 0.41 6.32 7.92 -40.82 -0.32 6.00 16 26 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 27 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -30.64 287.10 -4.61 -35.25 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -2.24 Total: 13.45 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -2.07 Total: 12.72 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.18 Total: -51.68 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: 0.18 Total: -27.50 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.64 -4.61 -35.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700790876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.462 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds