Wall clock time and date at job start Mon Mar 30 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46748 * 300.00117 * 3 2 1 6 6 H 1.48498 * 109.47206 * 59.99794 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00046 * 179.97438 * 10 9 7 13 13 O 1.21443 * 119.99630 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99828 * 180.27751 * 14 12 10 16 16 C 1.50700 * 109.46769 * 179.72341 * 15 14 12 17 17 C 1.38238 * 120.40266 * 269.71913 * 16 15 14 18 18 N 1.31846 * 120.81623 * 179.68473 * 17 16 15 19 19 C 1.31869 * 121.75517 * 0.62925 * 18 17 16 20 20 C 1.38426 * 120.72380 * 359.66226 * 19 18 17 21 21 F 1.35096 * 120.44499 * 179.97438 * 20 19 18 22 22 C 1.38586 * 120.40723 * 90.00441 * 16 15 14 23 23 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 25 25 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 26 26 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 27 27 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 28 28 H 1.07999 * 119.59375 * 359.97438 * 17 16 15 29 29 H 1.07996 * 119.63936 * 179.67911 * 19 18 17 30 30 H 1.08006 * 120.79989 * 359.97076 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8854 2.3963 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3878 0.0016 10 6 2.0012 -3.5550 0.0026 11 8 3.2163 -3.5550 0.0022 12 6 1.2571 -4.8438 0.0044 13 8 0.0426 -4.8437 0.0053 14 7 1.9309 -6.0111 0.0049 15 6 1.1984 -7.2797 0.0004 16 6 2.1777 -8.4251 -0.0048 17 6 2.6270 -8.9560 -1.1995 18 7 3.4884 -9.9540 -1.2137 19 6 3.9452 -10.4923 -0.0999 20 6 3.5363 -10.0178 1.1345 21 9 4.0075 -10.5738 2.2720 22 6 2.6343 -8.9631 1.1880 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3877 0.0023 25 1 2.9009 -6.0110 0.0038 26 1 0.5724 -7.3409 0.8907 27 1 0.5710 -7.3340 -0.8892 28 1 2.2715 -8.5451 -2.1329 29 1 4.6462 -11.3122 -0.1514 30 1 2.2973 -8.5711 2.1363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700790876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:37 Heat of formation + Delta-G solvation = -105.868988 kcal Electronic energy + Delta-G solvation = -18798.214253 eV Core-core repulsion = 15314.086006 eV Total energy + Delta-G solvation = -3484.128247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.04680 -41.55109 -40.97690 -39.13345 -36.72271 -36.02760 -33.65727 -33.31854 -32.15666 -28.58084 -27.36167 -24.92534 -24.55768 -23.03067 -21.27203 -20.39190 -19.10717 -18.46673 -18.20821 -17.82536 -17.67836 -16.93715 -16.73416 -16.61802 -16.06438 -15.72937 -15.13833 -14.80777 -14.74449 -14.56050 -14.27002 -14.05979 -13.77521 -13.67446 -13.04247 -12.96275 -12.56914 -12.34575 -12.08173 -11.67294 -11.05007 -10.76783 -10.30329 -10.29076 -10.25085 -10.00227 -8.65893 -6.10466 -0.29165 -0.07317 0.59538 1.42469 1.46351 1.57891 1.82496 2.28619 2.37382 2.56188 2.86618 3.15811 3.27510 3.31668 3.48535 3.66252 3.77949 4.01902 4.04867 4.26789 4.59692 4.70879 4.75921 4.98504 5.19580 5.26212 5.49525 5.68517 6.12652 6.36227 6.68634 6.79798 6.99578 7.28675 7.80665 8.50008 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.003397 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.432908 B = 8239.639769 C = 8431.240804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.004 4.004 3 Si 1.009 2.991 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.510 5.510 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.524 3.476 13 O -0.560 6.560 14 N -0.693 5.693 15 C 0.165 3.835 16 C -0.127 4.127 17 C 0.110 3.890 18 N -0.476 5.476 19 C 0.083 3.917 20 C 0.039 3.961 21 F -0.132 7.132 22 C -0.088 4.088 23 H 0.289 0.711 24 H 0.401 0.599 25 H 0.415 0.585 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.182 0.818 29 H 0.192 0.808 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -17.125 0.678 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.144 5.144 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.307 3.693 13 O -0.439 6.439 14 N -0.346 5.346 15 C 0.042 3.958 16 C -0.130 4.130 17 C -0.047 4.047 18 N -0.183 5.183 19 C -0.075 4.075 20 C 0.018 3.982 21 F -0.111 7.111 22 C -0.115 4.115 23 H 0.099 0.901 24 H 0.236 0.764 25 H 0.251 0.749 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.199 0.801 29 H 0.209 0.791 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.504 -17.366 -0.086 17.716 hybrid contribution -0.077 0.957 1.121 1.476 sum 3.426 -16.409 1.035 16.794 Atomic orbital electron populations 1.69545 1.07767 1.30754 1.45167 1.26511 0.96488 1.03406 0.94411 0.84657 0.78273 0.75391 0.78708 1.18837 1.19097 1.19119 1.20005 0.93665 0.83102 1.50691 0.88391 1.41655 1.10273 1.04772 1.57704 1.19642 0.87860 0.85303 0.89848 1.90561 1.13931 1.87293 1.59027 1.19966 0.86936 0.85643 0.76743 1.90702 1.14342 1.88175 1.50682 1.45646 1.11447 1.04026 1.73455 1.20299 0.92227 0.78178 1.05060 1.20637 1.00138 0.98512 0.93694 1.23185 0.91647 0.91228 0.98632 1.67883 1.10297 1.10075 1.30052 1.23395 0.98634 0.99745 0.85742 1.18850 0.99030 0.96616 0.83752 1.91535 1.86906 1.84085 1.48535 1.21862 0.94834 0.94080 1.00724 0.90096 0.76384 0.74865 0.89202 0.88506 0.80107 0.79111 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.23 13.03 21.77 0.28 -46.95 16 2 C 0.00 -0.19 5.51 85.14 0.47 0.28 16 3 Si 1.01 40.16 29.56 68.60 2.03 42.19 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.34 -19.07 9.67 84.35 0.82 -18.26 16 8 H 0.10 5.60 7.15 -2.91 -0.02 5.58 16 9 N -0.51 -27.27 5.25 -308.87 -1.62 -28.90 16 10 C 0.39 19.22 7.82 87.08 0.68 19.90 16 11 O -0.62 -32.78 16.03 -3.73 -0.06 -32.84 16 12 C 0.52 21.25 7.87 87.08 0.69 21.93 16 13 O -0.56 -24.47 16.47 -3.54 -0.06 -24.53 16 14 N -0.69 -20.78 5.54 -468.75 -2.60 -23.38 16 15 C 0.16 3.57 5.82 85.63 0.50 4.07 16 16 C -0.13 -2.31 5.26 -19.78 -0.10 -2.41 16 17 C 0.11 1.98 10.86 84.69 0.92 2.90 16 18 N -0.48 -9.20 10.36 -195.66 -2.03 -11.23 16 19 C 0.08 1.37 11.17 84.73 0.95 2.32 16 20 C 0.04 0.68 7.35 22.47 0.17 0.85 16 21 F -0.13 -2.43 17.28 44.97 0.78 -1.66 16 22 C -0.09 -1.53 9.85 22.51 0.22 -1.31 16 23 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 24 H 0.40 21.62 7.35 -92.71 -0.68 20.94 16 25 H 0.41 12.17 7.92 -92.71 -0.73 11.44 16 26 H 0.09 1.88 8.10 -2.38 -0.02 1.86 16 27 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 28 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -65.46 287.10 1.83 -63.63 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.19 Total: 33.39 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 5.30 Total: 30.26 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -5.96 Total: -110.45 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -0.12 Total: -57.37 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -65.46 1.83 -63.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700790876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.238 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds