Wall clock time and date at job start Mon Mar 30 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00223 * 2 1 4 4 H 1.48498 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46910 * 299.99761 * 3 2 1 6 6 H 1.48499 * 109.47362 * 59.99724 * 3 2 1 7 7 C 1.38803 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99559 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99688 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46918 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00317 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99996 * 179.97438 * 11 10 9 14 14 C 1.39410 * 119.99965 * 180.02562 * 13 11 10 15 15 N 1.32374 * 119.69485 * 359.97438 * 14 13 11 16 16 C 1.31904 * 121.63585 * 179.97438 * 15 14 13 17 17 C 1.38117 * 120.84841 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.30867 * 359.97438 * 17 16 15 19 19 C 1.38409 * 118.49401 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.44795 * 180.02562 * 19 18 17 21 21 N 1.46906 * 109.47044 * 259.97627 * 20 19 18 22 22 H 0.96998 * 119.99851 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47430 * 60.00407 * 10 9 7 24 24 H 1.08998 * 109.47046 * 299.99515 * 10 9 7 25 25 H 0.96992 * 119.99801 * 359.97438 * 13 11 10 26 26 H 1.08002 * 119.57936 * 179.72351 * 16 15 14 27 27 H 1.07998 * 120.34746 * 179.97438 * 17 16 15 28 28 H 1.08005 * 120.75474 * 179.97438 * 18 17 16 29 29 H 1.09001 * 109.47289 * 19.97724 * 20 19 18 30 30 H 1.09001 * 109.47162 * 139.97614 * 20 19 18 31 31 H 1.00900 * 110.99446 * 56.04183 * 21 20 19 32 32 H 1.00891 * 110.99907 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0030 13 7 2.8440 -6.3432 0.0037 14 6 2.3551 -7.6487 0.0040 15 7 1.0482 -7.8596 0.0040 16 6 0.5441 -9.0784 0.0037 17 6 1.3691 -10.1861 0.0039 18 6 2.7456 -10.0081 0.0039 19 6 3.2444 -8.7170 0.0031 20 6 4.7314 -8.4728 0.0024 21 7 5.1761 -8.1549 1.3660 22 1 -0.4850 0.8400 -0.0004 23 1 3.1237 -3.7311 0.8925 24 1 3.1250 -3.7318 -0.8875 25 1 3.8007 -6.1836 0.0033 26 1 -0.5276 -9.2121 0.0083 27 1 0.9476 -11.1805 0.0041 28 1 3.4124 -10.8577 0.0044 29 1 5.2463 -9.3671 -0.3485 30 1 4.9622 -7.6377 -0.6590 31 1 4.9158 -8.8861 2.0108 32 1 6.1705 -7.9865 1.3919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700974029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:32 Heat of formation + Delta-G solvation = 13.505179 kcal Electronic energy + Delta-G solvation = -17201.497314 eV Core-core repulsion = 14288.758696 eV Total energy + Delta-G solvation = -2912.738618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78166 -38.62894 -35.66315 -34.37976 -32.40989 -31.92901 -30.52517 -28.63420 -25.57283 -25.45301 -23.63531 -21.81272 -20.31038 -18.37630 -17.57385 -16.75611 -16.44236 -15.54890 -15.37855 -15.24093 -14.78770 -14.74920 -14.21674 -13.71973 -13.68685 -13.31790 -13.17255 -12.92546 -12.56365 -12.04765 -11.63436 -11.05532 -10.99951 -10.75122 -10.56783 -9.88106 -9.79622 -9.78330 -9.10866 -9.05445 -8.77448 -8.21459 -8.13691 -6.48002 -6.19821 -3.90267 1.05779 1.29728 2.89439 3.11705 3.23347 3.27676 3.32901 3.60331 3.89867 4.21591 4.30215 4.41964 4.58333 4.74353 4.86562 5.00960 5.15498 5.16784 5.24208 5.38598 5.62170 5.66201 5.88814 5.92980 6.06796 6.14170 6.34862 6.69085 6.85267 7.07500 7.37894 7.61996 8.18463 8.37386 8.64067 9.25550 10.87707 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.004059 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.280550 B = 6896.692994 C = 7592.544691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.152 4.152 11 C 0.517 3.483 12 O -0.448 6.448 13 N -0.657 5.657 14 C 0.395 3.605 15 N -0.477 5.477 16 C 0.138 3.862 17 C -0.219 4.219 18 C -0.044 4.044 19 C -0.189 4.189 20 C 0.109 3.891 21 N -0.847 5.847 22 H 0.268 0.732 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.417 0.583 26 H 0.157 0.843 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.344 0.656 32 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -20.476 0.163 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.303 4.303 11 C 0.303 3.697 12 O -0.314 6.314 13 N -0.305 5.305 14 C 0.162 3.838 15 N -0.191 5.191 16 C -0.021 4.021 17 C -0.240 4.240 18 C -0.071 4.071 19 C -0.196 4.196 20 C -0.022 4.022 21 N -0.377 5.377 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.255 0.745 26 H 0.175 0.825 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.580 -19.176 0.096 20.620 hybrid contribution 3.578 -0.312 -0.070 3.592 sum 11.158 -19.488 0.026 22.456 Atomic orbital electron populations 1.70029 1.05958 1.27350 1.46918 1.24992 0.95020 0.99027 0.94536 0.86109 0.79583 0.81867 0.77885 1.19606 1.20580 1.20568 1.22913 0.94980 0.91599 1.58871 0.90809 1.85436 1.04572 0.96249 1.96716 1.23553 1.06852 0.94712 1.05160 1.20623 0.86875 0.86005 0.76247 1.90807 1.14501 1.84547 1.41555 1.43893 1.11300 1.02837 1.72453 1.18364 0.88883 0.84997 0.91534 1.67821 1.11698 1.24541 1.15022 1.22750 1.00573 0.86585 0.92189 1.21960 0.94079 1.00471 1.07533 1.21196 0.95530 0.95549 0.94823 1.20115 0.95713 0.93008 1.10728 1.20503 0.90368 1.00194 0.91159 1.58692 1.20942 1.51203 1.06901 0.92231 0.88873 0.89065 0.74495 0.82541 0.85030 0.85177 0.94124 0.90266 0.84308 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.93 16 11 C 0.52 10.42 7.81 -10.98 -0.09 10.34 16 12 O -0.45 -10.83 14.11 5.56 0.08 -10.75 16 13 N -0.66 -10.27 5.31 -11.43 -0.06 -10.33 16 14 C 0.40 6.07 7.41 -154.70 -1.15 4.93 16 15 N -0.48 -8.29 7.87 -12.37 -0.10 -8.38 16 16 C 0.14 1.81 11.18 -17.56 -0.20 1.61 16 17 C -0.22 -2.18 10.11 -39.42 -0.40 -2.57 16 18 C -0.04 -0.42 9.81 -39.31 -0.39 -0.80 16 19 C -0.19 -2.12 5.43 -104.28 -0.57 -2.68 16 20 C 0.11 0.88 6.22 -4.97 -0.03 0.85 16 21 N -0.85 -6.41 9.61 -11.41 -0.11 -6.52 16 22 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 24 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 25 H 0.42 5.18 6.92 -40.82 -0.28 4.90 16 26 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.04 0.25 8.03 -51.93 -0.42 -0.16 16 30 H 0.08 0.63 7.11 -51.93 -0.37 0.26 16 31 H 0.34 2.41 8.98 -39.29 -0.35 2.06 16 32 H 0.35 1.87 9.08 -39.30 -0.36 1.51 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -36.39 297.38 -8.04 -44.43 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.44 Total: 4.31 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.39 Total: -4.34 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.47 Total: -50.88 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.39 -8.04 -44.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700974029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.934 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds