Wall clock time and date at job start Mon Mar 30 2020 05:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00223 * 2 1 4 4 H 1.48498 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46910 * 299.99761 * 3 2 1 6 6 H 1.48499 * 109.47362 * 59.99724 * 3 2 1 7 7 C 1.38803 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99559 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99688 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46918 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00317 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99996 * 179.97438 * 11 10 9 14 14 C 1.39410 * 119.99965 * 180.02562 * 13 11 10 15 15 N 1.32374 * 119.69485 * 359.97438 * 14 13 11 16 16 C 1.31904 * 121.63585 * 179.97438 * 15 14 13 17 17 C 1.38117 * 120.84841 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.30867 * 359.97438 * 17 16 15 19 19 C 1.38409 * 118.49401 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.44795 * 180.02562 * 19 18 17 21 21 N 1.46906 * 109.47044 * 259.97627 * 20 19 18 22 22 H 0.96998 * 119.99851 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47430 * 60.00407 * 10 9 7 24 24 H 1.08998 * 109.47046 * 299.99515 * 10 9 7 25 25 H 0.96992 * 119.99801 * 359.97438 * 13 11 10 26 26 H 1.08002 * 119.57936 * 179.72351 * 16 15 14 27 27 H 1.07998 * 120.34746 * 179.97438 * 17 16 15 28 28 H 1.08005 * 120.75474 * 179.97438 * 18 17 16 29 29 H 1.09001 * 109.47289 * 19.97724 * 20 19 18 30 30 H 1.09001 * 109.47162 * 139.97614 * 20 19 18 31 31 H 1.00900 * 110.99446 * 56.04183 * 21 20 19 32 32 H 1.00891 * 110.99907 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0030 13 7 2.8440 -6.3432 0.0037 14 6 2.3551 -7.6487 0.0040 15 7 1.0482 -7.8596 0.0040 16 6 0.5441 -9.0784 0.0037 17 6 1.3691 -10.1861 0.0039 18 6 2.7456 -10.0081 0.0039 19 6 3.2444 -8.7170 0.0031 20 6 4.7314 -8.4728 0.0024 21 7 5.1761 -8.1549 1.3660 22 1 -0.4850 0.8400 -0.0004 23 1 3.1237 -3.7311 0.8925 24 1 3.1250 -3.7318 -0.8875 25 1 3.8007 -6.1836 0.0033 26 1 -0.5276 -9.2121 0.0083 27 1 0.9476 -11.1805 0.0041 28 1 3.4124 -10.8577 0.0044 29 1 5.2463 -9.3671 -0.3485 30 1 4.9622 -7.6377 -0.6590 31 1 4.9158 -8.8861 2.0108 32 1 6.1705 -7.9865 1.3919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700974029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:31 Heat of formation + Delta-G solvation = -14.802813 kcal Electronic energy + Delta-G solvation = -17202.724840 eV Core-core repulsion = 14288.758696 eV Total energy + Delta-G solvation = -2913.966145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.87064 -39.98634 -36.51714 -35.54887 -34.58518 -32.82783 -31.74732 -29.97111 -27.67747 -26.29993 -24.72595 -22.64433 -21.67037 -19.97589 -19.07817 -18.11256 -17.18635 -16.88377 -16.72068 -16.60240 -16.34685 -15.88885 -15.56597 -14.95671 -14.77644 -14.62484 -14.35869 -13.98889 -13.70643 -13.58573 -13.15988 -12.90967 -12.60950 -12.36012 -11.79861 -11.72504 -11.27005 -11.15630 -10.70774 -10.29260 -10.02919 -9.58383 -9.18691 -8.67757 -8.34646 -6.13363 0.10652 0.41141 1.22598 1.42370 1.44699 1.57607 1.66193 2.06171 2.26834 2.93242 2.99820 3.22233 3.49481 3.72875 3.79776 3.92073 4.09272 4.18081 4.25745 4.28931 4.45931 4.56070 4.67689 4.87040 5.08957 5.23639 5.35302 5.42370 5.84643 6.16887 6.20339 6.22138 6.63264 7.00580 7.06525 7.37822 8.75070 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.004059 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.280550 B = 6896.692994 C = 7592.544691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.148 6.148 10 C -0.126 4.126 11 C 0.520 3.480 12 O -0.501 6.501 13 N -0.641 5.641 14 C 0.352 3.648 15 N -0.534 5.534 16 C 0.106 3.894 17 C -0.195 4.195 18 C -0.041 4.041 19 C -0.174 4.174 20 C 0.110 3.890 21 N -0.858 5.858 22 H 0.271 0.729 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.431 0.569 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.348 0.652 32 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 -22.238 0.147 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.277 4.277 11 C 0.306 3.694 12 O -0.371 6.371 13 N -0.290 5.290 14 C 0.121 3.879 15 N -0.248 5.248 16 C -0.052 4.052 17 C -0.216 4.216 18 C -0.067 4.067 19 C -0.180 4.180 20 C -0.021 4.021 21 N -0.391 5.391 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.132 0.868 25 H 0.272 0.728 26 H 0.181 0.819 27 H 0.187 0.813 28 H 0.193 0.807 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.769 -21.003 0.082 23.603 hybrid contribution 2.637 -0.023 -0.059 2.638 sum 13.406 -21.025 0.023 24.936 Atomic orbital electron populations 1.70197 1.08055 1.28588 1.48040 1.26154 0.95964 1.03377 0.93655 0.84870 0.78631 0.76141 0.78070 1.17893 1.19894 1.19934 1.23249 0.95438 0.91821 1.58887 0.89718 1.85639 1.10173 0.99213 1.97056 1.23361 1.03841 0.93450 1.07065 1.20446 0.86596 0.86575 0.75832 1.90787 1.16579 1.85232 1.44517 1.43463 1.11267 1.02484 1.71757 1.18657 0.89313 0.85289 0.94654 1.67604 1.13576 1.27170 1.16499 1.23052 1.01688 0.86613 0.93816 1.22367 0.94279 1.00962 1.04027 1.21748 0.95903 0.96046 0.93051 1.20479 0.96872 0.92487 1.08187 1.20558 0.88333 1.01642 0.91586 1.58635 1.22137 1.51637 1.06710 0.91976 0.86969 0.86818 0.72800 0.81902 0.81321 0.80745 0.91148 0.90288 0.83870 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.73 9.50 67.96 0.65 -31.08 16 8 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 9 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 10 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 11 C 0.52 21.54 7.81 87.66 0.68 22.23 16 12 O -0.50 -25.59 14.11 -3.03 -0.04 -25.63 16 13 N -0.64 -19.94 5.31 -308.46 -1.64 -21.57 16 14 C 0.35 10.72 7.41 132.90 0.98 11.70 16 15 N -0.53 -19.10 7.87 -193.04 -1.52 -20.62 16 16 C 0.11 2.76 11.18 84.65 0.95 3.71 16 17 C -0.20 -3.31 10.11 22.37 0.23 -3.09 16 18 C -0.04 -0.61 9.81 22.44 0.22 -0.39 16 19 C -0.17 -3.46 5.43 -19.64 -0.11 -3.56 16 20 C 0.11 1.39 6.22 85.55 0.53 1.92 16 21 N -0.86 -10.46 9.61 -190.00 -1.83 -12.28 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.11 4.24 8.14 -2.40 -0.02 4.22 16 24 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 25 H 0.43 10.20 6.92 -92.71 -0.64 9.56 16 26 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 27 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.07 0.52 8.03 -2.39 -0.02 0.50 16 30 H 0.08 1.02 7.11 -2.39 -0.02 1.01 16 31 H 0.35 3.80 8.98 -89.69 -0.81 2.99 16 32 H 0.36 2.77 9.08 -89.70 -0.81 1.96 16 Total: -1.00 -84.18 297.38 0.08 -84.10 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -1.08 Total: 18.37 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.04 Total: -2.18 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.70 Total: -111.15 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.04 Total: -25.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -84.18 0.08 -84.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700974029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.295 kcal (2) G-P(sol) polarization free energy of solvation -84.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds