Wall clock time and date at job start Mon Mar 30 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34781 * 120.00168 * 2 1 4 4 O 1.21281 * 120.00003 * 185.27374 * 3 2 1 5 5 C 1.50702 * 119.99695 * 5.28402 * 3 2 1 6 6 S 1.81003 * 109.47184 * 179.97438 * 5 3 2 7 7 C 1.76194 * 100.00060 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00360 * 359.97438 * 7 6 5 9 9 C 1.38800 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31635 * 119.99792 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00173 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46921 * 59.99965 * 11 9 7 13 13 H 1.48495 * 109.47266 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47079 * 299.99829 * 11 9 7 15 15 C 1.39921 * 120.00140 * 180.02562 * 2 1 3 16 16 C 1.38930 * 120.04316 * 292.79841 * 15 2 1 17 17 C 1.38123 * 120.04122 * 180.02562 * 16 15 2 18 18 C 1.38220 * 120.12077 * 359.68153 * 17 16 15 19 19 C 1.38766 * 120.08573 * 0.59653 * 18 17 16 20 20 O 1.35897 * 120.01794 * 179.70287 * 19 18 17 21 21 C 1.38620 * 119.95801 * 359.42325 * 19 18 17 22 22 H 1.08999 * 109.47319 * 269.99918 * 1 2 3 23 23 H 1.09005 * 109.47335 * 29.99413 * 1 2 3 24 24 H 1.09004 * 109.47134 * 149.99400 * 1 2 3 25 25 H 1.09009 * 109.46888 * 299.99299 * 5 3 2 26 26 H 1.08998 * 109.47726 * 59.99489 * 5 3 2 27 27 H 0.97000 * 119.99592 * 180.02562 * 10 9 7 28 28 H 1.07998 * 119.97484 * 0.02562 * 16 15 2 29 29 H 1.07997 * 119.93534 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.95281 * 180.29858 * 18 17 16 31 31 H 0.96701 * 113.99230 * 269.72194 * 20 19 18 32 32 H 1.08001 * 120.06604 * 180.25390 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1694 -0.0965 5 6 1.3901 2.4695 0.1202 6 16 2.5651 3.8460 0.0905 7 6 1.4511 5.2026 0.2416 8 1 0.3888 5.0233 0.3172 9 6 1.9386 6.5020 0.2623 10 7 3.2333 6.7207 0.1697 11 14 0.7575 7.9404 0.4218 12 1 0.0007 7.8208 1.6938 13 1 1.5235 9.2125 0.4198 14 1 -0.1907 7.9313 -0.7210 15 6 2.1646 -1.2117 -0.0005 16 6 2.1088 -2.0476 1.1078 17 6 2.7999 -3.2435 1.1074 18 6 3.5430 -3.6148 0.0027 19 6 3.6070 -2.7812 -1.1048 20 8 4.3429 -3.1449 -2.1878 21 6 2.9151 -1.5801 -1.1080 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8901 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 0.6947 2.5671 -0.7135 26 1 0.8365 2.4851 1.0589 27 1 3.5741 7.6288 0.1846 28 1 1.5247 -1.7620 1.9701 29 1 2.7557 -3.8918 1.9700 30 1 4.0784 -4.5528 0.0035 31 1 5.2611 -2.8430 -2.1587 32 1 2.9604 -0.9319 -1.9707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701121663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:46 Heat of formation + Delta-G solvation = -43.291947 kcal Electronic energy + Delta-G solvation = -17217.940470 eV Core-core repulsion = 14270.446192 eV Total energy + Delta-G solvation = -2947.494277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46587 -38.94726 -36.82767 -35.07170 -32.45632 -31.05271 -29.90243 -28.55509 -26.65434 -25.51846 -23.00669 -22.48733 -19.88147 -18.17414 -17.66987 -16.78522 -16.48064 -16.13150 -15.99631 -14.88415 -14.84641 -14.81992 -14.08112 -13.77676 -13.30468 -13.11184 -12.67994 -12.55420 -12.29082 -12.23880 -12.11351 -11.77234 -11.07637 -11.05749 -10.83316 -10.75768 -9.86770 -9.53936 -9.30934 -9.08433 -8.82245 -8.43877 -8.27772 -6.54470 -6.24232 -3.95742 1.06939 1.20103 2.79363 2.90570 3.21891 3.22881 3.27371 3.47948 3.52309 4.14495 4.17546 4.79565 4.91464 4.96147 5.02885 5.09786 5.11037 5.30742 5.39869 5.45476 5.53677 5.62490 5.75619 5.83488 6.06946 6.16876 6.27100 6.35033 6.39883 6.93415 7.34036 7.52989 7.56573 8.32132 8.43548 9.20872 10.83159 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.040697 B = 0.003945 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.842792 B = 7095.634056 C = 7438.172710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.587 5.587 3 C 0.535 3.465 4 O -0.501 6.501 5 C -0.149 4.149 6 S -0.060 6.060 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.075 3.925 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.167 3.833 16 C -0.131 4.131 17 C -0.096 4.096 18 C -0.150 4.150 19 C 0.113 3.887 20 O -0.500 6.500 21 C -0.131 4.131 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.269 0.731 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.393 0.607 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -18.798 0.411 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.320 5.320 3 C 0.324 3.676 4 O -0.373 6.373 5 C -0.299 4.299 6 S 0.167 5.833 7 C -0.685 4.685 8 H 0.091 0.909 9 C -0.135 4.135 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.077 3.923 16 C -0.151 4.151 17 C -0.115 4.115 18 C -0.169 4.169 19 C 0.068 3.932 20 O -0.311 6.311 21 C -0.151 4.151 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.249 0.751 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.871 -18.863 0.071 19.080 hybrid contribution -1.776 1.173 0.344 2.156 sum -4.647 -17.689 0.415 18.294 Atomic orbital electron populations 1.21864 0.78203 1.03629 1.02314 1.45541 1.07049 1.03659 1.75777 1.20532 0.87945 0.84164 0.75001 1.90719 1.13964 1.86449 1.46208 1.23564 1.04657 0.96729 1.04970 1.85422 1.08440 0.93441 1.96021 1.22812 0.94679 0.92296 1.58706 0.90910 1.24991 0.95674 0.98353 0.94478 1.70009 1.11924 1.21810 1.46513 0.86214 0.80147 0.80238 0.78855 1.19910 1.20789 1.19903 1.17391 0.95344 0.86611 0.93004 1.21277 1.01246 0.95191 0.97349 1.20854 0.96521 0.96152 0.97938 1.21413 1.01873 1.00714 0.92878 1.18246 0.95596 0.92469 0.86851 1.84784 1.26838 1.78888 1.40556 1.21566 0.99250 0.95793 0.98467 0.92209 0.90001 0.91012 0.88958 0.88914 0.92085 0.85478 0.85206 0.85354 0.75088 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.10 59.84 0.60 1.48 16 2 N -0.59 -8.77 2.92 -120.84 -0.35 -9.13 16 3 C 0.53 10.31 7.57 -10.98 -0.08 10.23 16 4 O -0.50 -11.57 15.42 5.56 0.09 -11.49 16 5 C -0.15 -2.99 4.83 36.01 0.17 -2.81 16 6 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 11 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.17 2.41 4.82 -83.72 -0.40 2.00 16 16 C -0.13 -1.57 9.85 -39.37 -0.39 -1.95 16 17 C -0.10 -0.98 10.03 -39.63 -0.40 -1.38 16 18 C -0.15 -1.60 9.98 -39.39 -0.39 -2.00 16 19 C 0.11 1.42 6.70 -39.25 -0.26 1.16 16 20 O -0.50 -5.63 13.50 -19.42 -0.26 -5.89 16 21 C -0.13 -1.89 9.25 -39.25 -0.36 -2.26 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.84 6.48 -51.93 -0.34 0.50 16 24 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 25 H 0.09 1.69 7.24 -51.91 -0.38 1.31 16 26 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.39 2.74 9.06 45.56 0.41 3.15 16 32 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -35.17 300.11 -6.62 -41.79 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.80 Total: 1.47 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.31 Total: -8.35 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.38 Total: -34.39 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.18 Total: -17.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.17 -6.62 -41.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701121663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.497 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds