Wall clock time and date at job start Mon Mar 30 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34781 * 120.00168 * 2 1 4 4 O 1.21281 * 120.00003 * 185.27374 * 3 2 1 5 5 C 1.50702 * 119.99695 * 5.28402 * 3 2 1 6 6 S 1.81003 * 109.47184 * 179.97438 * 5 3 2 7 7 C 1.76194 * 100.00060 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00360 * 359.97438 * 7 6 5 9 9 C 1.38800 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31635 * 119.99792 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00173 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46921 * 59.99965 * 11 9 7 13 13 H 1.48495 * 109.47266 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47079 * 299.99829 * 11 9 7 15 15 C 1.39921 * 120.00140 * 180.02562 * 2 1 3 16 16 C 1.38930 * 120.04316 * 292.79841 * 15 2 1 17 17 C 1.38123 * 120.04122 * 180.02562 * 16 15 2 18 18 C 1.38220 * 120.12077 * 359.68153 * 17 16 15 19 19 C 1.38766 * 120.08573 * 0.59653 * 18 17 16 20 20 O 1.35897 * 120.01794 * 179.70287 * 19 18 17 21 21 C 1.38620 * 119.95801 * 359.42325 * 19 18 17 22 22 H 1.08999 * 109.47319 * 269.99918 * 1 2 3 23 23 H 1.09005 * 109.47335 * 29.99413 * 1 2 3 24 24 H 1.09004 * 109.47134 * 149.99400 * 1 2 3 25 25 H 1.09009 * 109.46888 * 299.99299 * 5 3 2 26 26 H 1.08998 * 109.47726 * 59.99489 * 5 3 2 27 27 H 0.97000 * 119.99592 * 180.02562 * 10 9 7 28 28 H 1.07998 * 119.97484 * 0.02562 * 16 15 2 29 29 H 1.07997 * 119.93534 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.95281 * 180.29858 * 18 17 16 31 31 H 0.96701 * 113.99230 * 269.72194 * 20 19 18 32 32 H 1.08001 * 120.06604 * 180.25390 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1694 -0.0965 5 6 1.3901 2.4695 0.1202 6 16 2.5651 3.8460 0.0905 7 6 1.4511 5.2026 0.2416 8 1 0.3888 5.0233 0.3172 9 6 1.9386 6.5020 0.2623 10 7 3.2333 6.7207 0.1697 11 14 0.7575 7.9404 0.4218 12 1 0.0007 7.8208 1.6938 13 1 1.5235 9.2125 0.4198 14 1 -0.1907 7.9313 -0.7210 15 6 2.1646 -1.2117 -0.0005 16 6 2.1088 -2.0476 1.1078 17 6 2.7999 -3.2435 1.1074 18 6 3.5430 -3.6148 0.0027 19 6 3.6070 -2.7812 -1.1048 20 8 4.3429 -3.1449 -2.1878 21 6 2.9151 -1.5801 -1.1080 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8901 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 0.6947 2.5671 -0.7135 26 1 0.8365 2.4851 1.0589 27 1 3.5741 7.6288 0.1846 28 1 1.5247 -1.7620 1.9701 29 1 2.7557 -3.8918 1.9700 30 1 4.0784 -4.5528 0.0035 31 1 5.2611 -2.8430 -2.1587 32 1 2.9604 -0.9319 -1.9707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701121663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:45 Heat of formation + Delta-G solvation = -68.470531 kcal Electronic energy + Delta-G solvation = -17219.032295 eV Core-core repulsion = 14270.446192 eV Total energy + Delta-G solvation = -2948.586103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.62581 -40.07589 -37.88636 -36.23360 -34.59139 -32.19727 -30.95145 -29.82396 -27.74254 -27.59065 -24.06439 -23.46052 -21.10677 -19.73942 -19.13127 -18.02909 -17.57168 -17.25699 -17.10234 -16.88190 -16.11670 -16.10984 -15.65180 -14.74867 -14.62891 -14.46424 -14.30159 -13.65584 -13.38861 -13.23360 -13.18485 -13.12146 -12.86876 -12.75505 -12.63223 -11.78699 -11.69424 -11.13180 -11.03310 -10.36939 -10.30033 -9.78492 -9.47384 -8.69748 -8.35150 -6.14381 0.13370 0.26465 1.21671 1.43109 1.44315 1.45150 1.54678 1.98489 2.26545 2.57802 2.99262 3.19839 3.31437 3.74239 3.91147 4.09348 4.14792 4.18239 4.23797 4.42672 4.46783 4.56811 4.62904 4.84213 4.87987 5.28400 5.37021 5.39419 5.41130 5.48735 5.91705 6.08199 6.19171 6.76223 7.02956 7.06025 8.73929 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.040697 B = 0.003945 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.842792 B = 7095.634056 C = 7438.172710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.574 5.574 3 C 0.533 3.467 4 O -0.552 6.552 5 C -0.121 4.121 6 S -0.152 6.152 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.262 1.262 15 C 0.140 3.860 16 C -0.133 4.133 17 C -0.085 4.085 18 C -0.145 4.145 19 C 0.106 3.894 20 O -0.509 6.509 21 C -0.158 4.158 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.271 0.729 28 H 0.145 0.855 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.409 0.591 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 -20.330 1.553 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.305 5.305 3 C 0.322 3.678 4 O -0.429 6.429 5 C -0.272 4.272 6 S 0.075 5.925 7 C -0.695 4.695 8 H 0.103 0.897 9 C -0.190 4.190 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.185 1.185 13 H -0.205 1.205 14 H -0.186 1.186 15 C 0.050 3.950 16 C -0.153 4.153 17 C -0.103 4.103 18 C -0.163 4.163 19 C 0.061 3.939 20 O -0.322 6.322 21 C -0.178 4.178 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.080 0.920 28 H 0.162 0.838 29 H 0.186 0.814 30 H 0.174 0.826 31 H 0.268 0.732 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.032 -20.441 1.210 21.086 hybrid contribution -1.113 1.443 -0.033 1.822 sum -6.145 -18.998 1.177 20.002 Atomic orbital electron populations 1.22209 0.75465 1.04930 1.04250 1.45452 1.08653 1.02670 1.73746 1.20377 0.87316 0.85126 0.74978 1.90694 1.15951 1.87204 1.49004 1.23369 1.02782 0.94222 1.06838 1.85621 1.13056 0.97419 1.96370 1.23167 0.95080 0.92660 1.58546 0.89684 1.26135 0.97542 1.01649 0.93706 1.70183 1.14324 1.22547 1.47774 0.84992 0.77594 0.75811 0.79542 1.18534 1.20480 1.18607 1.17650 0.96547 0.86729 0.94118 1.21509 1.01559 0.95393 0.96823 1.21305 0.94652 0.95625 0.98765 1.21753 1.01413 1.01131 0.92009 1.18408 0.95574 0.92165 0.87753 1.84731 1.28118 1.78828 1.40561 1.21554 1.01070 0.96852 0.98362 0.89856 0.89665 0.88876 0.86951 0.86828 0.91976 0.83751 0.81432 0.82592 0.73153 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.10 127.77 1.29 2.65 16 2 N -0.57 -16.72 2.92 -654.62 -1.91 -18.63 16 3 C 0.53 20.80 7.57 87.66 0.66 21.47 16 4 O -0.55 -26.62 15.42 -3.03 -0.05 -26.67 16 5 C -0.12 -4.84 4.83 71.24 0.34 -4.50 16 6 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 7 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.40 16 9 C 0.01 0.82 5.49 84.86 0.47 1.29 16 10 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 11 Si 1.00 43.16 29.55 68.60 2.03 45.18 16 12 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 15 C 0.14 3.93 4.82 38.14 0.18 4.11 16 16 C -0.13 -2.87 9.85 22.41 0.22 -2.65 16 17 C -0.09 -1.44 10.03 22.24 0.22 -1.22 16 18 C -0.14 -2.69 9.98 22.39 0.22 -2.47 16 19 C 0.11 2.59 6.70 22.49 0.15 2.74 16 20 O -0.51 -11.21 13.50 -92.39 -1.25 -12.45 16 21 C -0.16 -4.69 9.25 22.49 0.21 -4.48 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.08 1.56 6.48 -2.38 -0.02 1.54 16 24 H 0.09 1.39 8.05 -2.39 -0.02 1.37 16 25 H 0.11 4.01 7.24 -2.39 -0.02 3.99 16 26 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.41 5.59 9.06 -74.06 -0.67 4.92 16 32 H 0.10 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -79.59 300.11 3.03 -76.55 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.47 Total: 14.71 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.62 Total: -13.41 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.63 Total: -74.30 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.29 Total: -39.12 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -79.59 3.03 -76.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701121663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.081 kcal (2) G-P(sol) polarization free energy of solvation -79.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds