Wall clock time and date at job start Mon Mar 30 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00384 * 2 1 4 4 O 1.21292 * 120.00022 * 185.27091 * 3 2 1 5 5 C 1.50700 * 119.99680 * 5.27810 * 3 2 1 6 6 S 1.81001 * 109.46848 * 179.97438 * 5 3 2 7 7 C 1.76199 * 99.99797 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00199 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00084 * 180.02562 * 7 6 5 10 10 N 1.31637 * 119.99623 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47107 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47002 * 120.00222 * 11 9 7 14 14 H 1.48501 * 109.47272 * 240.00069 * 11 9 7 15 15 C 1.40117 * 119.99658 * 179.97438 * 2 1 3 16 16 C 1.38843 * 120.01388 * 292.83390 * 15 2 1 17 17 C 1.38093 * 119.98283 * 180.02562 * 16 15 2 18 18 C 1.38712 * 120.01321 * 0.02562 * 17 16 15 19 19 O 1.35976 * 119.98338 * 179.97438 * 18 17 16 20 20 C 1.38723 * 120.03479 * 0.23417 * 18 17 16 21 21 C 1.38093 * 120.00913 * 359.48730 * 20 18 17 22 22 H 1.08996 * 109.47442 * 270.00225 * 1 2 3 23 23 H 1.09007 * 109.46845 * 30.00197 * 1 2 3 24 24 H 1.08998 * 109.47375 * 149.99969 * 1 2 3 25 25 H 1.09001 * 109.47304 * 299.99606 * 5 3 2 26 26 H 1.08995 * 109.47414 * 59.99868 * 5 3 2 27 27 H 0.96995 * 119.99735 * 180.02562 * 10 9 7 28 28 H 1.08005 * 120.01097 * 0.02562 * 16 15 2 29 29 H 1.08001 * 119.99172 * 180.02562 * 17 16 15 30 30 H 0.96704 * 113.99692 * 90.00597 * 19 18 17 31 31 H 1.07999 * 119.99694 * 179.72227 * 20 18 17 32 32 H 1.07998 * 120.00461 * 180.23593 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3481 1.1693 -0.0965 5 6 1.3903 2.4695 0.1201 6 16 2.5654 3.8458 0.0904 7 6 1.4514 5.2026 0.2413 8 1 0.3891 5.0232 0.3176 9 6 1.9390 6.5020 0.2620 10 7 3.2337 6.7207 0.1685 11 14 0.7579 7.9404 0.4213 12 1 -0.6340 7.4305 0.5089 13 1 1.0801 8.7119 1.6486 14 1 0.8888 8.8222 -0.7664 15 6 2.1655 -1.2135 0.0005 16 6 2.1087 -2.0477 1.1089 17 6 2.7998 -3.2433 1.1090 18 6 3.5510 -3.6105 0.0022 19 8 4.2317 -4.7877 0.0031 20 6 3.6126 -2.7750 -1.1034 21 6 2.9174 -1.5818 -1.1071 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 0.6949 2.5670 -0.7136 26 1 0.8366 2.4851 1.0588 27 1 3.5744 7.6287 0.1833 28 1 1.5242 -1.7617 1.9709 29 1 2.7553 -3.8925 1.9709 30 1 3.7239 -5.5358 -0.3397 31 1 4.2013 -3.0594 -1.9630 32 1 2.9623 -0.9332 -1.9694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701122469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:47 Heat of formation + Delta-G solvation = -43.094606 kcal Electronic energy + Delta-G solvation = -17130.108271 eV Core-core repulsion = 14182.622551 eV Total energy + Delta-G solvation = -2947.485720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44379 -39.02032 -36.83921 -34.91899 -32.45103 -31.15646 -30.31999 -28.24544 -26.48708 -25.50365 -22.98213 -22.59321 -19.71497 -18.57600 -17.73080 -17.18283 -16.35953 -16.09124 -15.61616 -14.86418 -14.82720 -14.58786 -14.04475 -13.59014 -13.40660 -13.16393 -12.82146 -12.60592 -12.38535 -12.29234 -12.15291 -11.88615 -11.08766 -11.04434 -10.78385 -10.66516 -9.84018 -9.52483 -9.17766 -9.11784 -9.09417 -8.31424 -8.24921 -6.53599 -6.23955 -3.95168 1.02328 1.22632 2.82006 2.93204 3.20186 3.23723 3.29496 3.45340 3.55289 4.03429 4.17585 4.77558 4.81668 4.92855 5.03758 5.11302 5.20142 5.30398 5.43716 5.47546 5.54492 5.62215 5.82622 5.86375 5.91778 6.07587 6.27063 6.37592 6.44225 6.91996 7.36267 7.46460 7.57626 8.32998 8.45954 9.21350 10.83527 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.050125 B = 0.003714 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.467830 B = 7537.940153 C = 7840.549883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.587 5.587 3 C 0.534 3.466 4 O -0.500 6.500 5 C -0.148 4.148 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.920 3.080 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.143 3.857 16 C -0.106 4.106 17 C -0.136 4.136 18 C 0.097 3.903 19 O -0.499 6.499 20 C -0.134 4.134 21 C -0.088 4.088 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.268 0.732 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.387 0.613 31 H 0.131 0.869 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -20.263 -0.988 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.320 5.320 3 C 0.322 3.678 4 O -0.372 6.372 5 C -0.299 4.299 6 S 0.166 5.834 7 C -0.683 4.683 8 H 0.092 0.908 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.746 3.254 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.052 3.948 16 C -0.126 4.126 17 C -0.155 4.155 18 C 0.052 3.948 19 O -0.309 6.309 20 C -0.153 4.153 21 C -0.108 4.108 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.243 0.757 31 H 0.149 0.851 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.548 -19.729 -0.900 20.266 hybrid contribution -2.550 0.654 0.067 2.633 sum -7.098 -19.075 -0.833 20.370 Atomic orbital electron populations 1.21854 0.78373 1.03537 1.02245 1.45567 1.06945 1.03661 1.75841 1.20533 0.87959 0.84163 0.75100 1.90737 1.13934 1.86423 1.46095 1.23559 1.04633 0.96764 1.04933 1.85456 1.08454 0.93482 1.96000 1.22893 0.94730 0.92270 1.58448 0.90819 1.25006 0.95684 0.98397 0.94530 1.70032 1.11900 1.21603 1.46666 0.86100 0.80278 0.81052 0.77955 1.19598 1.20557 1.20555 1.17631 0.96581 0.86907 0.93639 1.21110 1.00035 0.94351 0.97092 1.21230 0.97622 0.97830 0.98858 1.18463 0.94468 0.88095 0.93734 1.84870 1.42005 1.17007 1.86998 1.21298 1.00337 0.95169 0.98486 1.21208 0.96193 0.95536 0.97847 0.92316 0.90046 0.91082 0.88981 0.88958 0.92199 0.85299 0.85140 0.75738 0.85070 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.10 59.85 0.60 1.45 16 2 N -0.59 -8.64 2.93 -120.78 -0.35 -8.99 16 3 C 0.53 10.30 7.57 -10.99 -0.08 10.22 16 4 O -0.50 -11.69 15.42 5.55 0.09 -11.60 16 5 C -0.15 -2.98 4.83 36.01 0.17 -2.81 16 6 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 11 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.14 2.02 4.83 -83.62 -0.40 1.61 16 16 C -0.11 -1.28 9.85 -39.41 -0.39 -1.67 16 17 C -0.14 -1.49 9.98 -39.46 -0.39 -1.88 16 18 C 0.10 1.09 6.70 -39.23 -0.26 0.83 16 19 O -0.50 -4.79 13.50 -19.66 -0.27 -5.06 16 20 C -0.13 -1.59 9.98 -39.46 -0.39 -1.98 16 21 C -0.09 -1.21 9.30 -39.41 -0.37 -1.58 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.81 6.48 -51.93 -0.34 0.48 16 24 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 25 H 0.09 1.67 7.24 -51.92 -0.38 1.30 16 26 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.39 1.63 9.06 45.56 0.41 2.04 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -35.71 300.13 -6.63 -42.34 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.80 Total: 0.40 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.32 Total: -8.65 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.38 Total: -34.32 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.18 Total: -16.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.71 -6.63 -42.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701122469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.757 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds