Wall clock time and date at job start Mon Mar 30 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00384 * 2 1 4 4 O 1.21292 * 120.00022 * 185.27091 * 3 2 1 5 5 C 1.50700 * 119.99680 * 5.27810 * 3 2 1 6 6 S 1.81001 * 109.46848 * 179.97438 * 5 3 2 7 7 C 1.76199 * 99.99797 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00199 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00084 * 180.02562 * 7 6 5 10 10 N 1.31637 * 119.99623 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47107 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47002 * 120.00222 * 11 9 7 14 14 H 1.48501 * 109.47272 * 240.00069 * 11 9 7 15 15 C 1.40117 * 119.99658 * 179.97438 * 2 1 3 16 16 C 1.38843 * 120.01388 * 292.83390 * 15 2 1 17 17 C 1.38093 * 119.98283 * 180.02562 * 16 15 2 18 18 C 1.38712 * 120.01321 * 0.02562 * 17 16 15 19 19 O 1.35976 * 119.98338 * 179.97438 * 18 17 16 20 20 C 1.38723 * 120.03479 * 0.23417 * 18 17 16 21 21 C 1.38093 * 120.00913 * 359.48730 * 20 18 17 22 22 H 1.08996 * 109.47442 * 270.00225 * 1 2 3 23 23 H 1.09007 * 109.46845 * 30.00197 * 1 2 3 24 24 H 1.08998 * 109.47375 * 149.99969 * 1 2 3 25 25 H 1.09001 * 109.47304 * 299.99606 * 5 3 2 26 26 H 1.08995 * 109.47414 * 59.99868 * 5 3 2 27 27 H 0.96995 * 119.99735 * 180.02562 * 10 9 7 28 28 H 1.08005 * 120.01097 * 0.02562 * 16 15 2 29 29 H 1.08001 * 119.99172 * 180.02562 * 17 16 15 30 30 H 0.96704 * 113.99692 * 90.00597 * 19 18 17 31 31 H 1.07999 * 119.99694 * 179.72227 * 20 18 17 32 32 H 1.07998 * 120.00461 * 180.23593 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3481 1.1693 -0.0965 5 6 1.3903 2.4695 0.1201 6 16 2.5654 3.8458 0.0904 7 6 1.4514 5.2026 0.2413 8 1 0.3891 5.0232 0.3176 9 6 1.9390 6.5020 0.2620 10 7 3.2337 6.7207 0.1685 11 14 0.7579 7.9404 0.4213 12 1 -0.6340 7.4305 0.5089 13 1 1.0801 8.7119 1.6486 14 1 0.8888 8.8222 -0.7664 15 6 2.1655 -1.2135 0.0005 16 6 2.1087 -2.0477 1.1089 17 6 2.7998 -3.2433 1.1090 18 6 3.5510 -3.6105 0.0022 19 8 4.2317 -4.7877 0.0031 20 6 3.6126 -2.7750 -1.1034 21 6 2.9174 -1.5818 -1.1071 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 0.6949 2.5670 -0.7136 26 1 0.8366 2.4851 1.0588 27 1 3.5744 7.6287 0.1833 28 1 1.5242 -1.7617 1.9709 29 1 2.7553 -3.8925 1.9709 30 1 3.7239 -5.5358 -0.3397 31 1 4.2013 -3.0594 -1.9630 32 1 2.9623 -0.9332 -1.9694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701122469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:47 Heat of formation + Delta-G solvation = -68.699634 kcal Electronic energy + Delta-G solvation = -17131.218588 eV Core-core repulsion = 14182.622551 eV Total energy + Delta-G solvation = -2948.596037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58830 -40.10416 -37.88014 -36.06139 -34.58825 -32.07200 -31.63946 -29.43263 -27.72006 -27.43145 -23.94231 -23.63037 -21.00107 -19.65393 -19.39132 -18.47192 -17.61099 -17.27094 -16.88510 -16.47879 -16.12246 -16.09250 -15.32064 -14.77841 -14.53605 -14.48978 -14.26437 -13.69072 -13.63924 -13.20986 -13.17272 -13.13149 -13.01825 -12.90736 -12.58895 -11.72281 -11.49647 -11.16148 -11.04640 -10.28097 -10.25204 -10.04277 -9.32646 -8.69125 -8.35120 -6.14026 0.08171 0.30469 1.23060 1.41998 1.44267 1.47252 1.57222 2.01858 2.26482 2.55945 2.99398 3.24701 3.25877 3.73342 3.90325 3.96341 4.13495 4.23649 4.30583 4.43902 4.47130 4.60807 4.66000 4.87104 4.96409 5.05236 5.36156 5.40940 5.42105 5.51580 5.90420 6.11528 6.19997 6.86642 7.05930 7.06645 8.74429 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.050125 B = 0.003714 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.467830 B = 7537.940153 C = 7840.549883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.573 5.573 3 C 0.532 3.468 4 O -0.554 6.554 5 C -0.121 4.121 6 S -0.155 6.155 7 C -0.544 4.544 8 H 0.085 0.915 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 1.001 2.999 12 H -0.254 1.254 13 H -0.275 1.275 14 H -0.275 1.275 15 C 0.113 3.887 16 C -0.104 4.104 17 C -0.134 4.134 18 C 0.104 3.896 19 O -0.506 6.506 20 C -0.141 4.141 21 C -0.105 4.105 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.271 0.729 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.413 0.587 31 H 0.144 0.856 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 -21.684 -0.263 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.303 5.303 3 C 0.321 3.679 4 O -0.430 6.430 5 C -0.271 4.271 6 S 0.073 5.927 7 C -0.691 4.691 8 H 0.104 0.896 9 C -0.192 4.192 10 N -0.549 5.549 11 Si 0.822 3.178 12 H -0.178 1.178 13 H -0.200 1.200 14 H -0.200 1.200 15 C 0.023 3.977 16 C -0.124 4.124 17 C -0.153 4.153 18 C 0.060 3.940 19 O -0.320 6.320 20 C -0.160 4.160 21 C -0.125 4.125 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.272 0.728 31 H 0.162 0.838 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.929 -21.220 -0.183 22.324 hybrid contribution -1.830 0.845 -0.172 2.023 sum -8.759 -20.376 -0.355 22.181 Atomic orbital electron populations 1.22208 0.75503 1.05038 1.04102 1.45455 1.08598 1.02565 1.73710 1.20378 0.87286 0.85171 0.75039 1.90712 1.16026 1.87218 1.49054 1.23363 1.02738 0.94203 1.06841 1.85665 1.13171 0.97547 1.96351 1.23228 0.95068 0.92599 1.58245 0.89646 1.26158 0.97562 1.01722 0.93794 1.70199 1.14318 1.22423 1.47928 0.84876 0.78226 0.76662 0.77996 1.17794 1.20029 1.20001 1.17863 0.98001 0.87005 0.94825 1.21279 1.00123 0.94268 0.96712 1.21519 0.96691 0.97618 0.99484 1.18542 0.93595 0.88534 0.93360 1.84808 1.42659 1.17297 1.87203 1.21461 1.00289 0.94720 0.99546 1.21208 0.97186 0.96323 0.97784 0.90191 0.89684 0.88571 0.86784 0.86945 0.92009 0.83652 0.82518 0.72764 0.83780 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.10 127.77 1.29 2.58 16 2 N -0.57 -16.22 2.93 -654.42 -1.92 -18.14 16 3 C 0.53 20.65 7.57 87.66 0.66 21.31 16 4 O -0.55 -26.87 15.42 -3.07 -0.05 -26.92 16 5 C -0.12 -4.79 4.83 71.24 0.34 -4.45 16 6 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 7 C -0.54 -30.83 9.50 67.96 0.65 -30.18 16 8 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 9 C 0.01 0.70 5.49 84.86 0.47 1.16 16 10 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 11 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 12 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 C 0.11 3.10 4.83 38.11 0.18 3.28 16 16 C -0.10 -2.30 9.85 22.38 0.22 -2.08 16 17 C -0.13 -2.57 9.98 22.35 0.22 -2.34 16 18 C 0.10 2.13 6.70 22.50 0.15 2.28 16 19 O -0.51 -8.32 13.50 -93.28 -1.26 -9.58 16 20 C -0.14 -3.24 9.98 22.35 0.22 -3.02 16 21 C -0.11 -2.90 9.30 22.38 0.21 -2.70 16 22 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.47 6.48 -2.38 -0.02 1.45 16 24 H 0.10 1.27 8.05 -2.39 -0.02 1.25 16 25 H 0.11 4.00 7.24 -2.39 -0.02 3.99 16 26 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.41 2.16 9.06 -74.05 -0.67 1.49 16 31 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.11 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -80.07 300.13 3.02 -77.05 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.47 Total: 12.05 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.62 Total: -14.16 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.63 Total: -73.98 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.31 Total: -36.49 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -80.07 3.02 -77.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701122469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.355 kcal (2) G-P(sol) polarization free energy of solvation -80.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds