Wall clock time and date at job start Mon Mar 30 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99934 * 2 1 4 4 H 1.48500 * 109.47004 * 270.00209 * 3 2 1 5 5 H 1.48499 * 109.47203 * 30.00175 * 3 2 1 6 6 H 1.48500 * 109.46918 * 150.00166 * 3 2 1 7 7 C 1.38806 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00216 * 196.50017 * 7 2 1 9 9 N 1.36943 * 120.00157 * 16.22665 * 7 2 1 10 10 C 1.46965 * 120.59241 * 39.81152 * 9 7 2 11 11 C 1.53813 * 108.39521 * 124.76163 * 10 9 7 12 12 N 1.46960 * 108.57866 * 49.64000 * 11 10 9 13 13 C 1.34781 * 120.59553 * 124.67043 * 12 11 10 14 14 O 1.21571 * 120.00174 * 187.73758 * 13 12 11 15 15 C 1.47686 * 119.99954 * 7.73524 * 13 12 11 16 16 C 1.39485 * 122.10808 * 188.01075 * 15 13 12 17 17 C 1.34997 * 111.68927 * 179.78113 * 16 15 13 18 18 S 1.71761 * 105.44911 * 0.43325 * 17 16 15 19 19 N 1.30608 * 122.10385 * 8.29407 * 15 13 12 20 20 C 1.46965 * 118.81195 * 304.64461 * 12 11 10 21 21 C 1.46960 * 120.59531 * 220.09837 * 9 7 2 22 22 H 0.97000 * 119.99683 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.61574 * 244.54447 * 10 9 7 24 24 H 1.09004 * 109.61256 * 5.06077 * 10 9 7 25 25 H 1.09000 * 109.74536 * 289.84859 * 11 10 9 26 26 H 1.09006 * 109.53358 * 169.30557 * 11 10 9 27 27 H 1.08006 * 124.15430 * 359.97438 * 16 15 13 28 28 H 1.07997 * 127.27925 * 180.13369 * 17 16 15 29 29 H 1.08997 * 109.60969 * 295.48224 * 20 12 11 30 30 H 1.09007 * 109.60987 * 174.97209 * 20 12 11 31 31 H 1.08996 * 109.60919 * 354.94579 * 21 9 7 32 32 H 1.09003 * 109.60738 * 115.45653 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0569 -1.2215 0.2651 9 7 1.3665 -2.3643 -0.3325 10 6 0.3861 -2.3900 -1.4270 11 6 0.8106 -3.4727 -2.4336 12 7 1.0831 -4.7152 -1.6976 13 6 0.4495 -5.8591 -2.0242 14 8 0.5747 -6.8448 -1.3238 15 6 -0.3970 -5.9150 -3.2331 16 6 -1.2002 -7.0173 -3.5254 17 6 -1.8867 -6.8437 -4.6748 18 16 -1.4188 -5.2974 -5.2580 19 7 -0.4365 -4.9377 -4.0987 20 6 2.0594 -4.6883 -0.5994 21 6 1.6391 -3.6068 0.4035 22 1 -0.4850 0.8401 0.0004 23 1 -0.6010 -2.6240 -1.0286 24 1 0.3632 -1.4183 -1.9205 25 1 1.7106 -3.1541 -2.9595 26 1 0.0058 -3.6405 -3.1494 27 1 -1.2673 -7.8999 -2.9065 28 1 -2.5796 -7.5335 -5.1335 29 1 3.0483 -4.4562 -0.9946 30 1 2.0793 -5.6590 -0.1038 31 1 2.4438 -3.4390 1.1192 32 1 0.7390 -3.9254 0.9293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705404596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:36 Heat of formation + Delta-G solvation = 55.342933 kcal Electronic energy + Delta-G solvation = -18311.849743 eV Core-core repulsion = 15400.925346 eV Total energy + Delta-G solvation = -2910.924397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46949 -38.28082 -36.69424 -33.87793 -31.91833 -31.03482 -30.14068 -27.46411 -25.91565 -23.56151 -22.88106 -21.54637 -20.17404 -18.88774 -18.55065 -17.23672 -16.06743 -15.57747 -15.47007 -14.69104 -14.39301 -14.02331 -13.68579 -13.52462 -13.36815 -13.26891 -13.07762 -12.33063 -11.99300 -11.44807 -11.25336 -10.91257 -10.79180 -10.58099 -10.45370 -10.24458 -10.08753 -9.86639 -9.83256 -9.13843 -8.87116 -8.53857 -8.20782 -6.53939 -5.83951 -3.40773 0.54788 1.40784 1.78300 1.83440 3.33882 3.37108 3.41365 3.42870 3.49560 4.44663 4.63030 4.84748 5.22395 5.32492 5.43476 5.50459 5.72154 5.89814 5.94177 6.04641 6.17783 6.29007 6.35852 6.50353 6.60914 6.84919 6.97737 7.22428 7.36370 7.77840 7.87640 8.43549 8.46291 9.14557 9.73794 10.39686 11.21517 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.028597 B = 0.005525 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.893569 B = 5066.662131 C = 5780.178604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.016 3.984 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.267 4.267 8 H 0.062 0.938 9 N -0.588 5.588 10 C 0.165 3.835 11 C 0.059 3.941 12 N -0.574 5.574 13 C 0.580 3.420 14 O -0.549 6.549 15 C 0.059 3.941 16 C -0.134 4.134 17 C -0.280 4.280 18 S 0.429 5.571 19 N -0.497 5.497 20 C 0.094 3.906 21 C 0.132 3.868 22 H 0.255 0.745 23 H 0.023 0.977 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.124 0.876 27 H 0.170 0.830 28 H 0.184 0.816 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -11.170 -11.076 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.185 4.185 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.079 0.921 9 N -0.311 5.311 10 C 0.038 3.962 11 C -0.067 4.067 12 N -0.304 5.304 13 C 0.363 3.637 14 O -0.427 6.427 15 C -0.115 4.115 16 C -0.167 4.167 17 C -0.429 4.429 18 S 0.587 5.413 19 N -0.331 5.331 20 C -0.029 4.029 21 C 0.005 3.995 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.188 0.812 28 H 0.201 0.799 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.399 -9.768 -11.897 15.764 hybrid contribution 0.317 -0.489 1.248 1.378 sum -3.082 -10.257 -10.649 15.103 Atomic orbital electron populations 1.70049 1.05545 1.25843 1.52075 1.25369 0.95194 0.98870 0.99045 0.86321 0.79333 0.83423 0.77814 1.21191 1.21666 1.20178 1.19077 0.92072 0.84404 1.44129 0.92054 1.43909 1.48270 1.04976 1.33978 1.21154 0.91425 0.95944 0.87708 1.23664 1.02687 0.84102 0.96256 1.47904 1.40034 1.08840 1.33615 1.17347 0.79709 0.83581 0.83102 1.90739 1.64403 1.35753 1.51854 1.21318 1.01921 0.90887 0.97363 1.21387 0.96921 1.00428 0.97966 1.27116 1.07554 1.06399 1.01865 1.80755 1.29753 1.06359 1.24480 1.72946 1.22999 1.28497 1.08641 1.22337 0.90794 1.01141 0.88678 1.21323 0.98611 0.87012 0.92552 0.93481 0.95868 0.90188 0.92066 0.85921 0.81242 0.79890 0.91648 0.89881 0.91363 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 12.04 55.49 0.67 -25.24 16 2 C 0.02 0.45 4.87 -17.43 -0.08 0.36 16 3 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.27 -7.29 9.43 -15.06 -0.14 -7.43 16 8 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -14.91 2.88 -171.77 -0.49 -15.40 16 10 C 0.16 3.93 5.52 -3.37 -0.02 3.92 16 11 C 0.06 1.18 6.18 -3.37 -0.02 1.16 16 12 N -0.57 -11.32 2.95 -173.39 -0.51 -11.83 16 13 C 0.58 11.02 7.66 -12.40 -0.09 10.92 16 14 O -0.55 -11.30 16.11 5.30 0.09 -11.21 16 15 C 0.06 0.94 6.48 -84.06 -0.54 0.40 16 16 C -0.13 -1.70 9.98 -40.27 -0.40 -2.10 16 17 C -0.28 -2.66 11.41 29.58 0.34 -2.32 16 18 S 0.43 4.42 23.20 -107.50 -2.49 1.92 16 19 N -0.50 -7.39 7.35 24.85 0.18 -7.20 16 20 C 0.09 1.82 6.60 -3.60 -0.02 1.80 16 21 C 0.13 2.90 6.67 -3.60 -0.02 2.87 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 2.06 6.86 -51.93 -0.36 1.70 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.12 2.28 4.01 -78.45 -0.31 1.97 16 27 H 0.17 2.00 8.00 -52.48 -0.42 1.58 16 28 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.53 7.00 -51.92 -0.36 1.17 16 31 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 280.86 15.07 4.23 4.23 Total: -1.00 -31.80 280.86 -7.91 -39.70 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.53 Total: -0.87 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.02 Total: 9.57 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.15 Total: -59.68 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -2.49 Total: 1.92 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.80 -7.91 -39.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705404596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.047 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds