Wall clock time and date at job start Mon Mar 30 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99934 * 2 1 4 4 H 1.48500 * 109.47004 * 270.00209 * 3 2 1 5 5 H 1.48499 * 109.47203 * 30.00175 * 3 2 1 6 6 H 1.48500 * 109.46918 * 150.00166 * 3 2 1 7 7 C 1.38806 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00216 * 196.50017 * 7 2 1 9 9 N 1.36943 * 120.00157 * 16.22665 * 7 2 1 10 10 C 1.46965 * 120.59241 * 39.81152 * 9 7 2 11 11 C 1.53813 * 108.39521 * 124.76163 * 10 9 7 12 12 N 1.46960 * 108.57866 * 49.64000 * 11 10 9 13 13 C 1.34781 * 120.59553 * 124.67043 * 12 11 10 14 14 O 1.21571 * 120.00174 * 187.73758 * 13 12 11 15 15 C 1.47686 * 119.99954 * 7.73524 * 13 12 11 16 16 C 1.39485 * 122.10808 * 188.01075 * 15 13 12 17 17 C 1.34997 * 111.68927 * 179.78113 * 16 15 13 18 18 S 1.71761 * 105.44911 * 0.43325 * 17 16 15 19 19 N 1.30608 * 122.10385 * 8.29407 * 15 13 12 20 20 C 1.46965 * 118.81195 * 304.64461 * 12 11 10 21 21 C 1.46960 * 120.59531 * 220.09837 * 9 7 2 22 22 H 0.97000 * 119.99683 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.61574 * 244.54447 * 10 9 7 24 24 H 1.09004 * 109.61256 * 5.06077 * 10 9 7 25 25 H 1.09000 * 109.74536 * 289.84859 * 11 10 9 26 26 H 1.09006 * 109.53358 * 169.30557 * 11 10 9 27 27 H 1.08006 * 124.15430 * 359.97438 * 16 15 13 28 28 H 1.07997 * 127.27925 * 180.13369 * 17 16 15 29 29 H 1.08997 * 109.60969 * 295.48224 * 20 12 11 30 30 H 1.09007 * 109.60987 * 174.97209 * 20 12 11 31 31 H 1.08996 * 109.60919 * 354.94579 * 21 9 7 32 32 H 1.09003 * 109.60738 * 115.45653 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0569 -1.2215 0.2651 9 7 1.3665 -2.3643 -0.3325 10 6 0.3861 -2.3900 -1.4270 11 6 0.8106 -3.4727 -2.4336 12 7 1.0831 -4.7152 -1.6976 13 6 0.4495 -5.8591 -2.0242 14 8 0.5747 -6.8448 -1.3238 15 6 -0.3970 -5.9150 -3.2331 16 6 -1.2002 -7.0173 -3.5254 17 6 -1.8867 -6.8437 -4.6748 18 16 -1.4188 -5.2974 -5.2580 19 7 -0.4365 -4.9377 -4.0987 20 6 2.0594 -4.6883 -0.5994 21 6 1.6391 -3.6068 0.4035 22 1 -0.4850 0.8401 0.0004 23 1 -0.6010 -2.6240 -1.0286 24 1 0.3632 -1.4183 -1.9205 25 1 1.7106 -3.1541 -2.9595 26 1 0.0058 -3.6405 -3.1494 27 1 -1.2673 -7.8999 -2.9065 28 1 -2.5796 -7.5335 -5.1335 29 1 3.0483 -4.4562 -0.9946 30 1 2.0793 -5.6590 -0.1038 31 1 2.4438 -3.4390 1.1192 32 1 0.7390 -3.9254 0.9293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705404596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:35 Heat of formation + Delta-G solvation = 34.144196 kcal Electronic energy + Delta-G solvation = -18312.768990 eV Core-core repulsion = 15400.925346 eV Total energy + Delta-G solvation = -2911.843643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74740 -39.59261 -38.37480 -35.67067 -33.43428 -32.52725 -31.82327 -29.12147 -27.36767 -25.32845 -24.55511 -22.92103 -21.59252 -20.38778 -19.58038 -18.83562 -17.70552 -17.18788 -16.80176 -16.59223 -15.65290 -15.58630 -15.37734 -15.11127 -15.05449 -14.50369 -14.24407 -13.97063 -13.49666 -13.34707 -12.73140 -12.59096 -12.41868 -12.25890 -12.17379 -12.08124 -11.72802 -11.54020 -10.90657 -10.66878 -10.45813 -9.97807 -9.67567 -8.57496 -7.91258 -5.54094 -0.45002 0.55785 0.74419 0.82084 1.46881 1.47653 1.57419 1.95625 2.13616 2.48454 3.21700 3.44755 3.61282 3.81875 4.20653 4.25227 4.39791 4.42729 4.54564 4.58519 4.65181 4.77088 4.86763 4.94769 5.05435 5.20078 5.26100 5.40532 5.58334 5.63143 6.35922 6.38689 6.96497 7.08309 7.70989 8.34120 9.11467 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.028597 B = 0.005525 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.893569 B = 5066.662131 C = 5780.178604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.034 4.034 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.279 4.279 8 H 0.064 0.936 9 N -0.606 5.606 10 C 0.174 3.826 11 C 0.077 3.923 12 N -0.585 5.585 13 C 0.577 3.423 14 O -0.572 6.572 15 C 0.030 3.970 16 C -0.153 4.153 17 C -0.254 4.254 18 S 0.513 5.487 19 N -0.545 5.545 20 C 0.104 3.896 21 C 0.132 3.868 22 H 0.253 0.747 23 H -0.006 1.006 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.144 0.856 27 H 0.173 0.827 28 H 0.228 0.772 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -11.977 -13.218 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.232 4.232 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.409 4.409 8 H 0.082 0.918 9 N -0.330 5.330 10 C 0.047 3.953 11 C -0.049 4.049 12 N -0.316 5.316 13 C 0.362 3.638 14 O -0.452 6.452 15 C -0.142 4.142 16 C -0.185 4.185 17 C -0.402 4.402 18 S 0.670 5.330 19 N -0.381 5.381 20 C -0.020 4.020 21 C 0.006 3.994 22 H 0.062 0.938 23 H 0.012 0.988 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.191 0.809 28 H 0.244 0.756 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -3.696 -10.611 -14.031 17.976 hybrid contribution 0.295 -0.316 1.790 1.841 sum -3.401 -10.927 -12.241 16.757 Atomic orbital electron populations 1.70193 1.07120 1.26423 1.53525 1.26150 0.95920 1.02130 0.98959 0.85246 0.78208 0.78941 0.77855 1.20636 1.22003 1.19093 1.19402 0.92394 0.85416 1.43699 0.91847 1.44174 1.48278 1.05553 1.34964 1.20955 0.90029 0.96180 0.88104 1.23424 1.03425 0.82892 0.95129 1.47963 1.40586 1.09181 1.33832 1.17834 0.79342 0.82729 0.83921 1.90703 1.65193 1.36266 1.53073 1.21053 1.03494 0.92694 0.96947 1.21434 0.97608 0.99930 0.99549 1.27598 1.06200 1.06429 1.00006 1.80406 1.26273 1.05599 1.20707 1.72267 1.25547 1.29965 1.10364 1.22158 0.91234 1.00309 0.88285 1.21380 0.98082 0.86657 0.93274 0.93768 0.98789 0.92617 0.92140 0.83986 0.80948 0.75555 0.90654 0.88990 0.90556 0.97660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 12.04 21.65 0.26 -55.09 16 2 C -0.03 -1.90 4.87 84.86 0.41 -1.49 16 3 Si 0.97 44.31 29.58 68.60 2.03 46.34 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.28 -15.48 9.43 84.03 0.79 -14.69 16 8 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 9 N -0.61 -31.56 2.88 -697.37 -2.01 -33.57 16 10 C 0.17 8.64 5.52 86.56 0.48 9.12 16 11 C 0.08 3.12 6.18 86.57 0.54 3.66 16 12 N -0.59 -23.36 2.95 -820.74 -2.42 -25.77 16 13 C 0.58 22.00 7.66 86.74 0.66 22.67 16 14 O -0.57 -23.73 16.11 -3.94 -0.06 -23.79 16 15 C 0.03 0.91 6.48 42.12 0.27 1.18 16 16 C -0.15 -3.55 9.98 21.82 0.22 -3.33 16 17 C -0.25 -3.71 11.41 67.07 0.77 -2.95 16 18 S 0.51 8.73 23.20 -56.49 -1.31 7.42 16 19 N -0.55 -15.31 7.35 -75.29 -0.55 -15.87 16 20 C 0.10 4.05 6.60 86.41 0.57 4.62 16 21 C 0.13 5.96 6.67 86.41 0.58 6.54 16 22 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 23 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.06 2.99 6.86 -2.38 -0.02 2.97 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.14 5.29 4.01 -54.75 -0.22 5.07 16 27 H 0.17 3.80 8.00 -2.91 -0.02 3.77 16 28 H 0.23 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.09 3.41 7.00 -2.38 -0.02 3.39 16 31 H 0.08 3.24 7.93 -2.39 -0.02 3.22 16 32 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -70.71 280.86 2.15 -68.56 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.93 Total: 6.43 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 5.29 Total: 25.34 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -4.72 Total: -130.30 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -1.31 Total: 7.42 kcal Total: -70.71 2.15 -68.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705404596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.706 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds