Wall clock time and date at job start Mon Mar 30 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39213 * 119.99881 * 2 1 4 4 C 1.39106 * 119.63466 * 359.44402 * 3 2 1 5 5 C 1.38251 * 119.17257 * 179.77401 * 4 3 2 6 6 C 1.39416 * 118.44724 * 0.49507 * 5 4 3 7 7 N 1.40190 * 120.40639 * 179.76975 * 6 5 4 8 8 C 1.34773 * 119.99705 * 325.02178 * 7 6 5 9 9 O 1.21289 * 120.00410 * 4.67165 * 8 7 6 10 10 C 1.50702 * 119.99699 * 184.67602 * 8 7 6 11 11 S 1.80998 * 109.47340 * 179.97438 * 10 8 7 12 12 C 1.76198 * 100.00234 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99921 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00189 * 179.97438 * 12 11 10 15 15 N 1.31635 * 119.99964 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00364 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46841 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47160 * 120.00057 * 16 14 12 19 19 H 1.48497 * 109.47296 * 240.00367 * 16 14 12 20 20 C 1.38615 * 119.18943 * 359.74936 * 6 5 4 21 21 N 1.31970 * 120.75886 * 0.02562 * 20 6 5 22 22 H 1.08997 * 109.47532 * 180.27898 * 1 2 3 23 23 H 1.09002 * 109.47695 * 300.28106 * 1 2 3 24 24 H 1.09003 * 109.47351 * 60.27782 * 1 2 3 25 25 H 0.96994 * 119.99996 * 179.71764 * 2 1 3 26 26 H 1.08006 * 120.41364 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.78064 * 180.22577 * 5 4 3 28 28 H 0.97001 * 119.99976 * 145.02025 * 7 6 5 29 29 H 1.09004 * 109.47168 * 299.99768 * 10 8 7 30 30 H 1.09003 * 109.47381 * 59.99317 * 10 8 7 31 31 H 0.96998 * 120.00142 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.62295 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1610 1.2056 0.0000 4 6 1.4578 2.4058 -0.0117 5 6 2.1586 3.5975 -0.0069 6 6 3.5519 3.5486 -0.0009 7 7 4.3035 4.7320 -0.0006 8 6 3.8602 5.8118 -0.6743 9 8 2.7722 5.7881 -1.2099 10 6 4.7165 7.0489 -0.7622 11 16 3.8519 8.3140 -1.7255 12 6 5.0442 9.6100 -1.6686 13 1 5.9747 9.4649 -1.1399 14 6 4.7875 10.8175 -2.3030 15 7 3.6532 10.9947 -2.9469 16 14 6.0512 12.1918 -2.2420 17 1 7.2322 11.7440 -1.4610 18 1 6.4738 12.5374 -3.6231 19 1 5.4526 13.3864 -1.5940 20 6 4.1850 2.3155 0.0053 21 7 3.4844 1.1971 0.0050 22 1 -0.3634 -1.0276 0.0050 23 1 -0.3634 0.5182 0.8874 24 1 -0.3634 0.5095 -0.8925 25 1 1.9499 -0.8400 0.0041 26 1 0.3778 2.4067 -0.0204 27 1 1.6390 4.5443 -0.0120 28 1 5.1425 4.7736 0.4844 29 1 4.9129 7.4268 0.2411 30 1 5.6603 6.8036 -1.2493 31 1 3.4736 11.8386 -3.3900 32 1 5.2640 2.2694 0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706014635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:51 Heat of formation + Delta-G solvation = 9.521428 kcal Electronic energy + Delta-G solvation = -16822.018098 eV Core-core repulsion = 13909.106732 eV Total energy + Delta-G solvation = -2912.911367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63501 -39.04272 -36.06361 -34.25301 -32.45938 -32.11456 -30.13252 -28.39567 -26.02583 -25.47361 -23.77029 -22.28538 -20.41374 -18.35640 -17.68185 -17.23948 -16.81607 -16.20247 -15.17247 -14.83205 -14.76583 -14.57325 -14.49267 -14.12047 -13.45240 -13.35748 -13.09521 -12.70149 -12.52556 -12.35712 -12.14517 -11.09360 -11.05324 -10.92066 -10.79428 -9.97383 -9.86078 -9.69930 -9.47525 -9.10558 -9.05760 -8.28887 -7.43921 -6.54449 -6.25000 -3.96099 1.22012 1.44185 2.86674 2.96270 3.08487 3.20056 3.26735 3.31104 3.64020 3.92586 4.16926 4.57693 4.83974 4.96839 5.01747 5.04418 5.10591 5.17554 5.27952 5.40196 5.59153 5.65327 5.80668 5.87105 6.06688 6.15626 6.34737 6.73374 6.94206 7.40810 7.53069 7.57330 8.09250 8.32324 8.43984 9.20663 10.82472 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.059880 B = 0.003285 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.487155 B = 8521.085510 C = 8902.197157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.736 5.736 3 C 0.378 3.622 4 C -0.217 4.217 5 C -0.035 4.035 6 C 0.048 3.952 7 N -0.673 5.673 8 C 0.532 3.468 9 O -0.503 6.503 10 C -0.153 4.153 11 S -0.058 6.058 12 C -0.535 4.535 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.121 3.879 21 N -0.529 5.529 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.403 0.597 26 H 0.133 0.867 27 H 0.152 0.848 28 H 0.409 0.591 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.268 0.732 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 -19.081 8.133 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.370 5.370 3 C 0.143 3.857 4 C -0.242 4.242 5 C -0.063 4.063 6 C -0.051 4.051 7 N -0.321 5.321 8 C 0.319 3.681 9 O -0.375 6.375 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.039 4.039 21 N -0.246 5.246 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.238 0.762 26 H 0.150 0.850 27 H 0.169 0.831 28 H 0.245 0.755 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.483 -19.695 7.105 21.225 hybrid contribution 2.218 1.430 0.818 2.762 sum -1.265 -18.265 7.923 19.949 Atomic orbital electron populations 1.21557 0.79157 1.02569 1.01451 1.44144 1.05520 1.05043 1.82309 1.18339 0.88214 0.86423 0.92760 1.21339 1.00926 0.91103 1.10861 1.21605 0.92589 0.99316 0.92763 1.18560 0.91828 0.87043 1.07624 1.43459 1.25425 1.10470 1.52710 1.20521 0.87138 0.83639 0.76786 1.90684 1.20977 1.81613 1.44262 1.23535 1.02959 0.97540 1.06334 1.85413 1.25298 1.06206 1.66256 1.22899 1.05264 1.00235 1.39959 0.90780 1.25002 0.96102 0.98032 0.94481 1.70024 1.22756 1.25412 1.32061 0.86099 0.80489 0.80755 0.78051 1.19590 1.20555 1.20551 1.22155 0.99459 0.85508 0.96758 1.67066 1.06261 1.30768 1.20471 0.90549 0.92738 0.92634 0.76249 0.84952 0.83085 0.75522 0.88830 0.88784 0.92194 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 9.92 59.84 0.59 1.21 16 2 N -0.74 -6.85 5.89 -67.17 -0.40 -7.24 16 3 C 0.38 4.72 7.65 -154.87 -1.18 3.54 16 4 C -0.22 -2.77 9.32 -39.25 -0.37 -3.14 16 5 C -0.03 -0.51 8.80 -39.14 -0.34 -0.86 16 6 C 0.05 0.67 6.32 -83.46 -0.53 0.14 16 7 N -0.67 -9.12 5.36 -9.73 -0.05 -9.17 16 8 C 0.53 9.61 7.71 -10.99 -0.08 9.52 16 9 O -0.50 -10.89 13.34 5.55 0.07 -10.82 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.73 16 11 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 12 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 13 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 16 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.12 1.51 11.11 -17.35 -0.19 1.31 16 21 N -0.53 -7.02 10.39 -12.26 -0.13 -7.15 16 22 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.05 0.33 7.93 -51.93 -0.41 -0.08 16 24 H 0.06 0.37 7.92 -51.93 -0.41 -0.05 16 25 H 0.40 3.26 8.95 -40.82 -0.37 2.90 16 26 H 0.13 1.40 6.70 -52.48 -0.35 1.05 16 27 H 0.15 2.46 6.32 -52.48 -0.33 2.13 16 28 H 0.41 4.02 8.83 -40.82 -0.36 3.66 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -34.57 296.88 -7.68 -42.26 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.47 Total: 4.10 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.69 Total: -3.72 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.16 Total: -48.68 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.57 -7.68 -42.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706014635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.778 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds