Wall clock time and date at job start Mon Mar 30 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39213 * 119.99881 * 2 1 4 4 C 1.39106 * 119.63466 * 359.44402 * 3 2 1 5 5 C 1.38251 * 119.17257 * 179.77401 * 4 3 2 6 6 C 1.39416 * 118.44724 * 0.49507 * 5 4 3 7 7 N 1.40190 * 120.40639 * 179.76975 * 6 5 4 8 8 C 1.34773 * 119.99705 * 325.02178 * 7 6 5 9 9 O 1.21289 * 120.00410 * 4.67165 * 8 7 6 10 10 C 1.50702 * 119.99699 * 184.67602 * 8 7 6 11 11 S 1.80998 * 109.47340 * 179.97438 * 10 8 7 12 12 C 1.76198 * 100.00234 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99921 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00189 * 179.97438 * 12 11 10 15 15 N 1.31635 * 119.99964 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00364 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46841 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47160 * 120.00057 * 16 14 12 19 19 H 1.48497 * 109.47296 * 240.00367 * 16 14 12 20 20 C 1.38615 * 119.18943 * 359.74936 * 6 5 4 21 21 N 1.31970 * 120.75886 * 0.02562 * 20 6 5 22 22 H 1.08997 * 109.47532 * 180.27898 * 1 2 3 23 23 H 1.09002 * 109.47695 * 300.28106 * 1 2 3 24 24 H 1.09003 * 109.47351 * 60.27782 * 1 2 3 25 25 H 0.96994 * 119.99996 * 179.71764 * 2 1 3 26 26 H 1.08006 * 120.41364 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.78064 * 180.22577 * 5 4 3 28 28 H 0.97001 * 119.99976 * 145.02025 * 7 6 5 29 29 H 1.09004 * 109.47168 * 299.99768 * 10 8 7 30 30 H 1.09003 * 109.47381 * 59.99317 * 10 8 7 31 31 H 0.96998 * 120.00142 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.62295 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1610 1.2056 0.0000 4 6 1.4578 2.4058 -0.0117 5 6 2.1586 3.5975 -0.0069 6 6 3.5519 3.5486 -0.0009 7 7 4.3035 4.7320 -0.0006 8 6 3.8602 5.8118 -0.6743 9 8 2.7722 5.7881 -1.2099 10 6 4.7165 7.0489 -0.7622 11 16 3.8519 8.3140 -1.7255 12 6 5.0442 9.6100 -1.6686 13 1 5.9747 9.4649 -1.1399 14 6 4.7875 10.8175 -2.3030 15 7 3.6532 10.9947 -2.9469 16 14 6.0512 12.1918 -2.2420 17 1 7.2322 11.7440 -1.4610 18 1 6.4738 12.5374 -3.6231 19 1 5.4526 13.3864 -1.5940 20 6 4.1850 2.3155 0.0053 21 7 3.4844 1.1971 0.0050 22 1 -0.3634 -1.0276 0.0050 23 1 -0.3634 0.5182 0.8874 24 1 -0.3634 0.5095 -0.8925 25 1 1.9499 -0.8400 0.0041 26 1 0.3778 2.4067 -0.0204 27 1 1.6390 4.5443 -0.0120 28 1 5.1425 4.7736 0.4844 29 1 4.9129 7.4268 0.2411 30 1 5.6603 6.8036 -1.2493 31 1 3.4736 11.8386 -3.3900 32 1 5.2640 2.2694 0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706014635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:51 Heat of formation + Delta-G solvation = -15.867896 kcal Electronic energy + Delta-G solvation = -16823.119062 eV Core-core repulsion = 13909.106732 eV Total energy + Delta-G solvation = -2914.012330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.74095 -40.28083 -37.02854 -35.37182 -34.57529 -33.18269 -31.42359 -29.51041 -27.67691 -26.75176 -24.79780 -23.30248 -21.71675 -19.96951 -18.98634 -18.40249 -17.93485 -17.43081 -16.87293 -16.47490 -16.08346 -15.62604 -15.40378 -15.36023 -14.91604 -14.53066 -14.27282 -14.14367 -13.63508 -13.47414 -13.14929 -12.91592 -12.90969 -12.59921 -12.03704 -11.72143 -11.20849 -11.15136 -10.72508 -10.60491 -10.27218 -10.15698 -8.66618 -8.37495 -8.34171 -6.11949 0.22102 0.36549 1.25523 1.42413 1.46344 1.56421 1.59649 2.12173 2.27464 2.37007 2.91933 3.00345 3.30370 3.66686 3.87393 3.99521 4.05645 4.23876 4.30910 4.46933 4.51919 4.67294 4.70903 4.86546 4.95616 5.08325 5.30931 5.43641 5.69915 6.05934 6.21026 6.39827 6.61606 7.07577 7.13001 7.18779 8.75050 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.059880 B = 0.003285 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.487155 B = 8521.085510 C = 8902.197157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.728 5.728 3 C 0.375 3.625 4 C -0.224 4.224 5 C -0.052 4.052 6 C 0.024 3.976 7 N -0.646 5.646 8 C 0.534 3.466 9 O -0.547 6.547 10 C -0.128 4.128 11 S -0.149 6.149 12 C -0.544 4.544 13 H 0.085 0.915 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.256 1.256 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.134 3.866 21 N -0.542 5.542 22 H 0.105 0.895 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.410 0.590 26 H 0.148 0.852 27 H 0.128 0.872 28 H 0.429 0.571 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.271 0.729 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -20.499 9.211 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.361 5.361 3 C 0.139 3.861 4 C -0.249 4.249 5 C -0.080 4.080 6 C -0.074 4.074 7 N -0.295 5.295 8 C 0.321 3.679 9 O -0.423 6.423 10 C -0.279 4.279 11 S 0.078 5.922 12 C -0.692 4.692 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.179 1.179 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.026 4.026 21 N -0.260 5.260 22 H 0.124 0.876 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.246 0.754 26 H 0.166 0.834 27 H 0.146 0.854 28 H 0.268 0.732 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.795 -21.185 8.221 22.795 hybrid contribution 1.631 1.643 0.543 2.378 sum -0.164 -19.542 8.764 21.418 Atomic orbital electron populations 1.21794 0.77364 1.04629 1.01535 1.44351 1.06706 1.04300 1.80771 1.18612 0.88313 0.87389 0.91778 1.21457 1.01781 0.90700 1.10983 1.21556 0.93426 0.99110 0.93861 1.18650 0.91618 0.87420 1.09730 1.43043 1.25835 1.09225 1.51383 1.20276 0.86382 0.84254 0.76998 1.90682 1.22713 1.82405 1.46518 1.23351 1.02686 0.95700 1.06132 1.85594 1.28274 1.09573 1.68751 1.23240 1.05443 1.00588 1.39909 0.89718 1.26126 0.98293 1.00962 0.93855 1.70188 1.25105 1.26286 1.33250 0.84901 0.77824 0.76888 0.78312 1.17937 1.20073 1.20023 1.22591 1.00846 0.84494 0.94646 1.67201 1.06622 1.30912 1.21270 0.87604 0.92300 0.92828 0.75425 0.83431 0.85439 0.73152 0.86550 0.86624 0.92031 0.79507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 9.92 127.77 1.27 2.22 16 2 N -0.73 -12.01 5.89 -366.42 -2.16 -14.17 16 3 C 0.38 8.82 7.65 133.00 1.02 9.83 16 4 C -0.22 -5.61 9.32 22.48 0.21 -5.40 16 5 C -0.05 -1.54 8.80 22.56 0.20 -1.34 16 6 C 0.02 0.65 6.32 38.18 0.24 0.89 16 7 N -0.65 -16.58 5.36 -303.08 -1.62 -18.20 16 8 C 0.53 19.14 7.71 87.66 0.68 19.82 16 9 O -0.55 -24.47 13.34 -3.06 -0.04 -24.51 16 10 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 11 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 12 C -0.54 -30.49 9.50 67.95 0.65 -29.84 16 13 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 14 C 0.01 0.69 5.49 84.86 0.47 1.16 16 15 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 16 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.13 3.05 11.11 84.76 0.94 3.99 16 21 N -0.54 -13.33 10.39 -192.69 -2.00 -15.33 16 22 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.06 0.60 7.93 -2.39 -0.02 0.58 16 24 H 0.05 0.61 7.92 -2.39 -0.02 0.59 16 25 H 0.41 5.67 8.95 -92.71 -0.83 4.84 16 26 H 0.15 3.06 6.70 -2.91 -0.02 3.04 16 27 H 0.13 4.39 6.32 -2.91 -0.02 4.38 16 28 H 0.43 7.29 8.83 -92.71 -0.82 6.48 16 29 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -77.00 296.88 0.95 -76.05 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.48 Total: 18.56 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.10 Total: -3.05 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -5.50 Total: -102.97 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.04 Total: -24.51 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -77.00 0.95 -76.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706014635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.184 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds