Wall clock time and date at job start Mon Mar 30 2020 04:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86795 * 119.99945 * 2 1 4 4 H 1.48508 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47182 * 299.99637 * 3 2 1 6 6 H 1.48494 * 109.47275 * 60.00048 * 3 2 1 7 7 C 1.39049 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99632 * 197.23097 * 7 2 1 9 9 N 1.36877 * 119.99942 * 17.23872 * 7 2 1 10 10 C 1.34772 * 120.00247 * 196.61312 * 9 7 2 11 11 O 1.21609 * 119.99862 * 2.99605 * 10 9 7 12 12 C 1.47662 * 120.00935 * 182.99882 * 10 9 7 13 13 C 1.40052 * 120.92892 * 318.86166 * 12 10 9 14 14 N 1.32096 * 118.93352 * 180.26722 * 13 12 10 15 15 C 1.32029 * 120.96345 * 0.02562 * 14 13 12 16 16 Cl 1.73591 * 118.96401 * 180.02562 * 15 14 13 17 17 N 1.32022 * 122.07310 * 359.97438 * 15 14 13 18 18 C 1.32103 * 120.96381 * 0.02562 * 17 15 14 19 19 C 1.46504 * 120.00334 * 16.61201 * 9 7 2 20 20 C 1.52993 * 117.50208 * 130.39981 * 19 9 7 21 21 C 1.52994 * 117.49830 * 61.77458 * 19 9 7 22 22 H 0.96993 * 120.00271 * 4.94141 * 1 2 3 23 23 H 1.08005 * 120.52735 * 0.24392 * 13 12 10 24 24 H 1.08000 * 120.53437 * 180.02562 * 18 17 15 25 25 H 1.09005 * 115.54686 * 276.11097 * 19 9 7 26 26 H 1.09001 * 117.50113 * 359.97438 * 20 19 9 27 27 H 1.08994 * 117.50108 * 145.01940 * 20 19 9 28 28 H 1.09005 * 117.50136 * 214.97940 * 21 19 9 29 29 H 1.09000 * 117.50400 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8890 2.3964 1.2124 7 6 2.0089 -1.2042 0.0005 8 1 3.0525 -1.2250 0.2776 9 7 1.3706 -2.3631 -0.3502 10 6 1.9175 -3.5547 -0.0382 11 8 2.9502 -3.6007 0.6024 12 6 1.2631 -4.8045 -0.4742 13 6 -0.1287 -4.9480 -0.4118 14 7 -0.6723 -6.0851 -0.8071 15 6 0.0762 -7.0763 -1.2549 16 17 -0.6928 -8.5478 -1.7616 17 7 1.3909 -6.9833 -1.3303 18 6 2.0169 -5.8819 -0.9559 19 6 0.0929 -2.3083 -1.0648 20 6 -0.0497 -3.1655 -2.3241 21 6 0.0826 -1.6460 -2.4439 22 1 -0.4850 0.8368 -0.0724 23 1 -0.7474 -4.1419 -0.0459 24 1 3.0928 -5.8131 -1.0209 25 1 -0.7906 -2.1816 -0.4391 26 1 0.8073 -3.7700 -2.6212 27 1 -1.0271 -3.6032 -2.5270 28 1 -0.8078 -1.0840 -2.7258 29 1 1.0264 -1.2506 -2.8195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706810929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:13 Heat of formation + Delta-G solvation = 54.635842 kcal Electronic energy + Delta-G solvation = -18112.913513 eV Core-core repulsion = 15064.081653 eV Total energy + Delta-G solvation = -3048.831860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99344 -38.80505 -36.77273 -36.35060 -33.73991 -33.44431 -31.76282 -31.13727 -25.94020 -24.60886 -24.09685 -22.02664 -21.64170 -19.71621 -17.85182 -17.59671 -17.20990 -16.26805 -15.41595 -15.08114 -14.62291 -14.18661 -13.99746 -13.62770 -13.52519 -12.95859 -12.52565 -11.71821 -11.67521 -11.42498 -11.28715 -11.25657 -11.04272 -10.81047 -10.61465 -10.47497 -10.21878 -9.71456 -9.21547 -9.14031 -9.00156 -8.66979 -8.07101 -6.59561 -4.08125 0.70900 1.18224 1.51867 3.00000 3.14154 3.19591 3.44281 3.84034 3.99748 4.20596 4.40850 4.41339 4.73609 4.82729 4.91439 5.19321 5.27990 5.50097 5.70688 5.90915 6.02324 6.03054 6.32728 6.47946 6.66165 6.88679 6.92926 7.31329 7.77282 7.94942 8.17625 8.88591 9.08943 9.64173 10.42536 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.005609 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.558465 B = 4990.885358 C = 5404.974999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.042 3.958 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.306 4.306 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.477 3.523 11 O -0.579 6.579 12 C -0.185 4.185 13 C 0.192 3.808 14 N -0.508 5.508 15 C 0.349 3.651 16 Cl 0.010 6.990 17 N -0.510 5.510 18 C 0.190 3.810 19 C 0.118 3.882 20 C -0.223 4.223 21 C -0.148 4.148 22 H 0.272 0.728 23 H 0.183 0.817 24 H 0.181 0.819 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -6.546 -4.719 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.433 4.433 8 H 0.127 0.873 9 N -0.110 5.110 10 C 0.265 3.735 11 O -0.464 6.464 12 C -0.193 4.193 13 C 0.026 3.974 14 N -0.224 5.224 15 C 0.056 3.944 16 Cl 0.037 6.963 17 N -0.226 5.226 18 C 0.024 3.976 19 C 0.012 3.988 20 C -0.261 4.261 21 C -0.185 4.185 22 H 0.083 0.917 23 H 0.200 0.800 24 H 0.198 0.802 25 H 0.143 0.857 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.518 -7.355 -4.670 9.396 hybrid contribution 0.474 1.527 0.048 1.599 sum -3.044 -5.828 -4.623 8.037 Atomic orbital electron populations 1.69920 1.06094 1.28486 1.44517 1.25288 0.95379 0.99830 0.95990 0.85914 0.80175 0.81017 0.78034 1.18983 1.20366 1.20503 1.19819 0.96055 0.82994 1.44447 0.87341 1.43147 1.17664 1.04774 1.45391 1.17218 0.87739 0.82062 0.86466 1.90669 1.25600 1.85969 1.44209 1.22130 0.96121 0.99057 1.01961 1.23674 0.92180 0.92592 0.88963 1.67844 1.40847 1.00593 1.13136 1.22912 0.86557 0.89775 0.95182 1.98402 1.79727 1.29687 1.88449 1.67832 1.09324 1.26879 1.18581 1.23283 1.00909 0.85301 0.88105 1.21497 0.89148 1.01145 0.86974 1.23684 1.02140 0.95372 1.04891 1.22906 1.02609 0.92517 1.00513 0.91725 0.80004 0.80198 0.85684 0.89977 0.88663 0.89119 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.07 10.56 55.50 0.59 -19.48 15 2 C 0.04 0.99 4.91 -17.45 -0.09 0.91 15 3 Si 0.92 18.93 29.59 -169.99 -5.03 13.90 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.31 -7.73 9.23 -15.00 -0.14 -7.87 15 8 H 0.11 2.90 7.36 -52.49 -0.39 2.52 15 9 N -0.39 -9.12 2.93 -108.86 -0.32 -9.44 15 10 C 0.48 10.85 7.23 -12.41 -0.09 10.76 15 11 O -0.58 -15.08 16.62 5.27 0.09 -15.00 15 12 C -0.18 -3.45 3.86 -104.70 -0.40 -3.85 15 13 C 0.19 3.28 7.79 -16.76 -0.13 3.15 15 14 N -0.51 -8.45 10.39 -11.27 -0.12 -8.57 15 15 C 0.35 5.70 8.17 -91.76 -0.75 4.95 15 16 Cl 0.01 0.13 29.26 -51.86 -1.52 -1.39 15 17 N -0.51 -8.54 10.39 -11.28 -0.12 -8.65 15 18 C 0.19 3.25 10.98 -16.76 -0.18 3.07 15 19 C 0.12 2.33 2.16 -67.93 -0.15 2.18 15 20 C -0.22 -3.76 7.10 -26.74 -0.19 -3.95 15 21 C -0.15 -2.71 9.32 -26.74 -0.25 -2.96 15 22 H 0.27 6.07 8.31 -40.82 -0.34 5.73 15 23 H 0.18 2.97 5.99 -52.48 -0.31 2.65 15 24 H 0.18 2.80 8.06 -52.49 -0.42 2.37 15 25 H 0.13 2.54 7.02 -51.93 -0.36 2.18 15 26 H 0.08 1.45 6.99 -51.93 -0.36 1.09 15 27 H 0.10 1.45 8.05 -51.93 -0.42 1.03 15 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 29 H 0.09 1.76 8.14 -51.93 -0.42 1.34 15 LS Contribution 269.86 15.07 4.07 4.07 Total: -1.00 -26.82 269.86 -6.98 -33.80 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -2.25 Total: 4.36 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.37 Total: 6.40 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.03 Total: -46.14 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.82 -6.98 -33.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706810929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.436 kcal (2) G-P(sol) polarization free energy of solvation -26.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds