Wall clock time and date at job start Mon Mar 30 2020 04:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86795 * 119.99945 * 2 1 4 4 H 1.48508 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47182 * 299.99637 * 3 2 1 6 6 H 1.48494 * 109.47275 * 60.00048 * 3 2 1 7 7 C 1.39049 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99632 * 197.23097 * 7 2 1 9 9 N 1.36877 * 119.99942 * 17.23872 * 7 2 1 10 10 C 1.34772 * 120.00247 * 196.61312 * 9 7 2 11 11 O 1.21609 * 119.99862 * 2.99605 * 10 9 7 12 12 C 1.47662 * 120.00935 * 182.99882 * 10 9 7 13 13 C 1.40052 * 120.92892 * 318.86166 * 12 10 9 14 14 N 1.32096 * 118.93352 * 180.26722 * 13 12 10 15 15 C 1.32029 * 120.96345 * 0.02562 * 14 13 12 16 16 Cl 1.73591 * 118.96401 * 180.02562 * 15 14 13 17 17 N 1.32022 * 122.07310 * 359.97438 * 15 14 13 18 18 C 1.32103 * 120.96381 * 0.02562 * 17 15 14 19 19 C 1.46504 * 120.00334 * 16.61201 * 9 7 2 20 20 C 1.52993 * 117.50208 * 130.39981 * 19 9 7 21 21 C 1.52994 * 117.49830 * 61.77458 * 19 9 7 22 22 H 0.96993 * 120.00271 * 4.94141 * 1 2 3 23 23 H 1.08005 * 120.52735 * 0.24392 * 13 12 10 24 24 H 1.08000 * 120.53437 * 180.02562 * 18 17 15 25 25 H 1.09005 * 115.54686 * 276.11097 * 19 9 7 26 26 H 1.09001 * 117.50113 * 359.97438 * 20 19 9 27 27 H 1.08994 * 117.50108 * 145.01940 * 20 19 9 28 28 H 1.09005 * 117.50136 * 214.97940 * 21 19 9 29 29 H 1.09000 * 117.50400 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8890 2.3964 1.2124 7 6 2.0089 -1.2042 0.0005 8 1 3.0525 -1.2250 0.2776 9 7 1.3706 -2.3631 -0.3502 10 6 1.9175 -3.5547 -0.0382 11 8 2.9502 -3.6007 0.6024 12 6 1.2631 -4.8045 -0.4742 13 6 -0.1287 -4.9480 -0.4118 14 7 -0.6723 -6.0851 -0.8071 15 6 0.0762 -7.0763 -1.2549 16 17 -0.6928 -8.5478 -1.7616 17 7 1.3909 -6.9833 -1.3303 18 6 2.0169 -5.8819 -0.9559 19 6 0.0929 -2.3083 -1.0648 20 6 -0.0497 -3.1655 -2.3241 21 6 0.0826 -1.6460 -2.4439 22 1 -0.4850 0.8368 -0.0724 23 1 -0.7474 -4.1419 -0.0459 24 1 3.0928 -5.8131 -1.0209 25 1 -0.7906 -2.1816 -0.4391 26 1 0.8073 -3.7700 -2.6212 27 1 -1.0271 -3.6032 -2.5270 28 1 -0.8078 -1.0840 -2.7258 29 1 1.0264 -1.2506 -2.8195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706810929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:13 Heat of formation + Delta-G solvation = 38.694862 kcal Electronic energy + Delta-G solvation = -18113.604765 eV Core-core repulsion = 15064.081653 eV Total energy + Delta-G solvation = -3049.523112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.41842 -40.43215 -38.06156 -37.97193 -35.24184 -35.01804 -33.38642 -32.76139 -27.63579 -26.00686 -25.63077 -23.58142 -23.11660 -21.37185 -19.30637 -19.00458 -18.80369 -17.89174 -17.15068 -16.45294 -16.21321 -15.88131 -15.35412 -15.28869 -15.00111 -14.51015 -14.13328 -13.34785 -12.95108 -12.94143 -12.81769 -12.57316 -12.54316 -12.37064 -12.15968 -12.12176 -11.83248 -11.23157 -10.82910 -10.57332 -10.54630 -10.31067 -9.85538 -8.38931 -5.97657 -0.68661 -0.18774 0.25330 1.35191 1.45295 1.55963 1.83290 2.19975 2.48973 2.73158 2.82956 2.94417 3.12060 3.34751 3.50401 3.62400 3.85885 4.04487 4.23412 4.40445 4.65381 4.65820 4.94162 5.02425 5.23321 5.34558 5.43457 5.53094 5.95663 6.37875 6.58577 7.06515 7.30942 7.86479 8.61685 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.005609 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.558465 B = 4990.885358 C = 5404.974999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.021 3.979 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.277 1.277 7 C -0.346 4.346 8 H 0.079 0.921 9 N -0.403 5.403 10 C 0.473 3.527 11 O -0.624 6.624 12 C -0.199 4.199 13 C 0.207 3.793 14 N -0.507 5.507 15 C 0.350 3.650 16 Cl 0.040 6.960 17 N -0.511 5.511 18 C 0.200 3.800 19 C 0.099 3.901 20 C -0.188 4.188 21 C -0.147 4.147 22 H 0.279 0.721 23 H 0.190 0.810 24 H 0.192 0.808 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -7.220 -5.797 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.202 1.202 7 C -0.473 4.473 8 H 0.097 0.903 9 N -0.117 5.117 10 C 0.262 3.738 11 O -0.513 6.513 12 C -0.207 4.207 13 C 0.040 3.960 14 N -0.223 5.223 15 C 0.057 3.943 16 Cl 0.068 6.932 17 N -0.228 5.228 18 C 0.034 3.966 19 C -0.005 4.005 20 C -0.226 4.226 21 C -0.185 4.185 22 H 0.089 0.911 23 H 0.207 0.793 24 H 0.209 0.791 25 H 0.138 0.862 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.124 0.876 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.979 -8.041 -5.772 11.080 hybrid contribution 0.855 1.584 0.377 1.839 sum -4.124 -6.457 -5.395 9.370 Atomic orbital electron populations 1.69952 1.06480 1.29384 1.43865 1.25829 0.96140 1.01535 0.95061 0.85116 0.78494 0.77856 0.78395 1.20068 1.18965 1.20239 1.19665 0.95421 0.84756 1.47436 0.90347 1.43248 1.18565 1.04308 1.45578 1.17758 0.87246 0.83196 0.85598 1.90620 1.27601 1.86944 1.46091 1.21756 0.96873 0.97748 1.04301 1.23722 0.91415 0.92936 0.87904 1.67986 1.40460 1.00433 1.13466 1.23387 0.86676 0.90524 0.93677 1.98420 1.79138 1.27754 1.87921 1.67972 1.09560 1.26371 1.18880 1.23456 1.01456 0.84775 0.86869 1.21501 0.87496 1.04037 0.87485 1.23620 1.03083 0.94366 1.01549 1.22901 1.02477 0.93869 0.99230 0.91115 0.79287 0.79136 0.86188 0.90590 0.86090 0.87590 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -40.09 10.56 21.68 0.23 -39.86 15 2 C 0.02 0.98 4.91 84.96 0.42 1.40 15 3 Si 0.98 38.95 29.59 68.60 2.03 40.98 15 4 H -0.28 -11.36 7.11 99.48 0.71 -10.66 15 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 6 H -0.28 -10.88 7.11 99.48 0.71 -10.17 15 7 C -0.35 -18.04 9.23 84.10 0.78 -17.27 15 8 H 0.08 4.46 7.36 -2.91 -0.02 4.44 15 9 N -0.40 -19.00 2.93 -616.57 -1.81 -20.81 15 10 C 0.47 22.02 7.23 86.73 0.63 22.64 15 11 O -0.62 -33.82 16.62 -4.06 -0.07 -33.89 15 12 C -0.20 -7.31 3.86 -19.91 -0.08 -7.39 15 13 C 0.21 6.71 7.79 85.09 0.66 7.37 15 14 N -0.51 -15.58 10.39 -189.58 -1.97 -17.55 15 15 C 0.35 10.53 8.17 180.75 1.48 12.00 15 16 Cl 0.04 0.96 29.26 -2.72 -0.08 0.88 15 17 N -0.51 -16.03 10.39 -189.59 -1.97 -18.00 15 18 C 0.20 6.63 10.98 85.09 0.93 7.56 15 19 C 0.10 3.88 2.16 44.99 0.10 3.97 15 20 C -0.19 -5.99 7.10 30.59 0.22 -5.77 15 21 C -0.15 -5.22 9.32 30.59 0.29 -4.93 15 22 H 0.28 12.10 8.31 -92.71 -0.77 11.33 15 23 H 0.19 5.89 5.99 -2.91 -0.02 5.87 15 24 H 0.19 5.81 8.06 -2.91 -0.02 5.79 15 25 H 0.12 4.80 7.02 -2.38 -0.02 4.78 15 26 H 0.08 2.56 6.99 -2.39 -0.02 2.54 15 27 H 0.12 3.26 8.05 -2.39 -0.02 3.24 15 28 H 0.11 3.41 8.14 -2.38 -0.02 3.39 15 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 15 Total: -1.00 -57.49 269.86 2.98 -54.51 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.20 Total: 14.15 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.42 Total: 19.59 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -5.52 Total: -96.23 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.07 Total: -33.89 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 17 Polarization: 0.96 SS G_CDS: -0.08 Total: 0.88 kcal Total: -57.49 2.98 -54.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706810929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.202 kcal (2) G-P(sol) polarization free energy of solvation -57.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds