Wall clock time and date at job start Mon Mar 30 2020 04:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47410 * 240.00418 * 3 2 1 5 5 H 1.48503 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46824 * 120.00361 * 3 2 1 7 7 C 1.39096 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00340 * 193.90530 * 7 2 1 9 9 N 1.36809 * 119.99764 * 13.89870 * 7 2 1 10 10 C 1.34776 * 119.99517 * 44.91000 * 9 7 2 11 11 O 1.21573 * 120.00432 * 354.89749 * 10 9 7 12 12 C 1.47949 * 119.99484 * 175.17946 * 10 9 7 13 13 C 1.39873 * 120.17196 * 174.05755 * 12 10 9 14 14 C 1.38678 * 117.90773 * 179.71361 * 13 12 10 15 15 C 1.38796 * 118.07133 * 0.56501 * 14 13 12 16 16 Cl 1.73597 * 119.97594 * 179.70852 * 15 14 13 17 17 N 1.32290 * 120.04971 * 359.68174 * 15 14 13 18 18 N 1.28344 * 122.28457 * 0.02915 * 17 15 14 19 19 C 1.46496 * 120.00184 * 224.91021 * 9 7 2 20 20 C 1.53003 * 117.49839 * 2.13215 * 19 9 7 21 21 C 1.53004 * 117.49820 * 293.47437 * 19 9 7 22 22 H 0.97008 * 120.00229 * 4.96853 * 1 2 3 23 23 H 1.08004 * 121.04840 * 359.96817 * 13 12 10 24 24 H 1.08003 * 120.96167 * 180.29123 * 14 13 12 25 25 H 1.08992 * 115.55451 * 147.80269 * 19 9 7 26 26 H 1.09005 * 117.49762 * 0.02562 * 20 19 9 27 27 H 1.08992 * 117.49922 * 145.01910 * 20 19 9 28 28 H 1.08998 * 117.50117 * 214.97919 * 21 19 9 29 29 H 1.09003 * 117.49465 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1011 1.6963 1.2125 7 6 2.0088 -1.2046 -0.0005 8 1 3.0650 -1.2184 0.2242 9 7 1.3548 -2.3719 -0.2857 10 6 0.4987 -2.4281 -1.3251 11 8 0.2366 -1.4199 -1.9520 12 6 -0.1270 -3.7155 -1.6992 13 6 -1.1083 -3.7570 -2.6951 14 6 -1.6590 -4.9895 -3.0127 15 6 -1.2122 -6.1036 -2.3159 16 17 -1.8733 -7.6696 -2.6681 17 7 -0.2825 -5.9731 -1.3838 18 7 0.2364 -4.8372 -1.0875 19 6 1.5850 -3.5608 0.5388 20 6 2.5299 -3.4195 1.7339 21 6 2.9769 -4.1944 0.4917 22 1 -0.4851 0.8369 -0.0728 23 1 -1.4242 -2.8581 -3.2037 24 1 -2.4167 -5.0791 -3.7771 25 1 0.7313 -4.2293 0.6486 26 1 2.9799 -2.4419 1.9069 27 1 2.2979 -3.9954 2.6297 28 1 3.0388 -5.2797 0.5709 29 1 3.7211 -3.7268 -0.1531 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706855572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:51 Heat of formation + Delta-G solvation = 75.930643 kcal Electronic energy + Delta-G solvation = -17992.742980 eV Core-core repulsion = 14944.834533 eV Total energy + Delta-G solvation = -3047.908448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75725 -38.43412 -36.77624 -36.10395 -33.21145 -32.81062 -32.06274 -30.80406 -25.94437 -24.61866 -23.92856 -21.65675 -21.24691 -20.08527 -17.99692 -17.03739 -16.82156 -16.14851 -15.15674 -14.90755 -14.41619 -14.17040 -13.75013 -13.47723 -13.18955 -12.70800 -12.25207 -12.01873 -11.52138 -11.47008 -11.00750 -10.98646 -10.85133 -10.72058 -10.31643 -10.11434 -9.92839 -9.80062 -9.32497 -9.10597 -8.94714 -8.28952 -7.21451 -6.26884 -4.07663 0.73151 0.95590 1.69987 3.21511 3.28109 3.29949 3.37738 4.03821 4.30780 4.44493 4.53496 4.68955 4.87242 4.97403 5.02235 5.16584 5.35517 5.77720 5.85003 5.90363 5.97855 6.13912 6.29446 6.38105 6.58009 6.92413 7.01576 7.40442 8.04753 8.72869 8.79834 8.93366 9.38625 10.02838 10.74410 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.006015 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.017884 B = 4654.002177 C = 5405.451570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.062 3.938 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.327 4.327 8 H 0.089 0.911 9 N -0.389 5.389 10 C 0.501 3.499 11 O -0.521 6.521 12 C 0.061 3.939 13 C -0.064 4.064 14 C -0.116 4.116 15 C 0.099 3.901 16 Cl -0.026 7.026 17 N -0.238 5.238 18 N -0.201 5.201 19 C 0.080 3.920 20 C -0.183 4.183 21 C -0.192 4.192 22 H 0.270 0.730 23 H 0.165 0.835 24 H 0.156 0.844 25 H 0.130 0.870 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -9.239 -3.195 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.151 4.151 3 Si 0.744 3.256 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.106 0.894 9 N -0.106 5.106 10 C 0.288 3.712 11 O -0.398 6.398 12 C -0.085 4.085 13 C -0.094 4.094 14 C -0.145 4.145 15 C -0.072 4.072 16 Cl 0.002 6.998 17 N -0.083 5.083 18 N -0.049 5.049 19 C -0.026 4.026 20 C -0.221 4.221 21 C -0.231 4.231 22 H 0.080 0.920 23 H 0.183 0.817 24 H 0.174 0.826 25 H 0.147 0.853 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.876 -9.414 -2.349 9.882 hybrid contribution -0.709 1.145 -1.108 1.744 sum -2.585 -8.269 -3.457 9.328 Atomic orbital electron populations 1.69849 1.06661 1.28418 1.39043 1.25370 0.94997 0.99698 0.95048 0.86172 0.79303 0.81347 0.78795 1.19765 1.20891 1.19922 1.19161 0.93011 0.83200 1.50104 0.89365 1.42689 1.37862 1.08417 1.21614 1.17087 0.85778 0.84931 0.83424 1.90655 1.62523 1.33201 1.53471 1.23867 0.94088 0.96823 0.93698 1.22457 0.93017 0.98632 0.95289 1.22082 1.00989 0.91127 1.00290 1.23449 0.97549 0.88532 0.97699 1.98385 1.83054 1.25224 1.93139 1.73004 1.05641 1.18426 1.11228 1.73874 1.18454 0.93653 1.18881 1.22247 0.93767 0.90807 0.95755 1.23190 1.04865 1.02136 0.91863 1.23175 0.99854 0.98549 1.01505 0.91957 0.81705 0.82623 0.85288 0.87808 0.89654 0.89413 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.85 11.28 55.50 0.63 -22.22 15 2 C 0.06 1.65 4.53 -17.45 -0.08 1.57 15 3 Si 0.92 20.67 29.58 -169.99 -5.03 15.64 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 15 7 C -0.33 -8.62 7.98 -15.01 -0.12 -8.74 15 8 H 0.09 2.21 7.21 -52.49 -0.38 1.83 15 9 N -0.39 -9.76 2.83 -108.76 -0.31 -10.07 15 10 C 0.50 12.73 7.03 -12.28 -0.09 12.64 15 11 O -0.52 -14.68 13.76 5.30 0.07 -14.60 15 12 C 0.06 1.27 6.71 -82.84 -0.56 0.72 15 13 C -0.06 -1.10 9.73 -38.81 -0.38 -1.47 15 14 C -0.12 -1.62 9.99 -39.21 -0.39 -2.01 15 15 C 0.10 1.52 7.37 -17.15 -0.13 1.40 15 16 Cl -0.03 -0.32 29.13 -51.86 -1.51 -1.83 15 17 N -0.24 -4.32 11.50 32.93 0.38 -3.94 15 18 N -0.20 -4.03 7.39 33.31 0.25 -3.78 15 19 C 0.08 1.71 4.88 -67.93 -0.33 1.38 15 20 C -0.18 -3.43 9.80 -26.69 -0.26 -3.69 15 21 C -0.19 -3.54 10.38 -26.69 -0.28 -3.82 15 22 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 23 H 0.17 2.67 7.73 -52.48 -0.41 2.27 15 24 H 0.16 1.54 8.06 -52.48 -0.42 1.12 15 25 H 0.13 2.76 5.78 -51.93 -0.30 2.46 15 26 H 0.10 2.06 6.71 -51.93 -0.35 1.71 15 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -30.10 273.40 -6.27 -36.37 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.26 Total: 2.34 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.61 Total: -2.02 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.94 Total: -40.01 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.10 -6.27 -36.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706855572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.296 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds