Wall clock time and date at job start Mon Mar 30 2020 04:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47410 * 240.00418 * 3 2 1 5 5 H 1.48503 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46824 * 120.00361 * 3 2 1 7 7 C 1.39096 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00340 * 193.90530 * 7 2 1 9 9 N 1.36809 * 119.99764 * 13.89870 * 7 2 1 10 10 C 1.34776 * 119.99517 * 44.91000 * 9 7 2 11 11 O 1.21573 * 120.00432 * 354.89749 * 10 9 7 12 12 C 1.47949 * 119.99484 * 175.17946 * 10 9 7 13 13 C 1.39873 * 120.17196 * 174.05755 * 12 10 9 14 14 C 1.38678 * 117.90773 * 179.71361 * 13 12 10 15 15 C 1.38796 * 118.07133 * 0.56501 * 14 13 12 16 16 Cl 1.73597 * 119.97594 * 179.70852 * 15 14 13 17 17 N 1.32290 * 120.04971 * 359.68174 * 15 14 13 18 18 N 1.28344 * 122.28457 * 0.02915 * 17 15 14 19 19 C 1.46496 * 120.00184 * 224.91021 * 9 7 2 20 20 C 1.53003 * 117.49839 * 2.13215 * 19 9 7 21 21 C 1.53004 * 117.49820 * 293.47437 * 19 9 7 22 22 H 0.97008 * 120.00229 * 4.96853 * 1 2 3 23 23 H 1.08004 * 121.04840 * 359.96817 * 13 12 10 24 24 H 1.08003 * 120.96167 * 180.29123 * 14 13 12 25 25 H 1.08992 * 115.55451 * 147.80269 * 19 9 7 26 26 H 1.09005 * 117.49762 * 0.02562 * 20 19 9 27 27 H 1.08992 * 117.49922 * 145.01910 * 20 19 9 28 28 H 1.08998 * 117.50117 * 214.97919 * 21 19 9 29 29 H 1.09003 * 117.49465 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1011 1.6963 1.2125 7 6 2.0088 -1.2046 -0.0005 8 1 3.0650 -1.2184 0.2242 9 7 1.3548 -2.3719 -0.2857 10 6 0.4987 -2.4281 -1.3251 11 8 0.2366 -1.4199 -1.9520 12 6 -0.1270 -3.7155 -1.6992 13 6 -1.1083 -3.7570 -2.6951 14 6 -1.6590 -4.9895 -3.0127 15 6 -1.2122 -6.1036 -2.3159 16 17 -1.8733 -7.6696 -2.6681 17 7 -0.2825 -5.9731 -1.3838 18 7 0.2364 -4.8372 -1.0875 19 6 1.5850 -3.5608 0.5388 20 6 2.5299 -3.4195 1.7339 21 6 2.9769 -4.1944 0.4917 22 1 -0.4851 0.8369 -0.0728 23 1 -1.4242 -2.8581 -3.2037 24 1 -2.4167 -5.0791 -3.7771 25 1 0.7313 -4.2293 0.6486 26 1 2.9799 -2.4419 1.9069 27 1 2.2979 -3.9954 2.6297 28 1 3.0388 -5.2797 0.5709 29 1 3.7211 -3.7268 -0.1531 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706855572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:51 Heat of formation + Delta-G solvation = 56.790345 kcal Electronic energy + Delta-G solvation = -17993.572966 eV Core-core repulsion = 14944.834533 eV Total energy + Delta-G solvation = -3048.738433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.21328 -40.18217 -37.95879 -37.83383 -34.96683 -34.26339 -33.65327 -32.57620 -27.72753 -26.09185 -25.45653 -23.23418 -22.85118 -21.83104 -19.62608 -18.40121 -18.26845 -17.92178 -16.79418 -16.59223 -16.05500 -15.70858 -15.43611 -15.04936 -14.75267 -14.25594 -13.90526 -13.38872 -13.17231 -12.85037 -12.77308 -12.63162 -12.43531 -12.22962 -12.06608 -11.63340 -11.43375 -11.28505 -10.83288 -10.72869 -10.61033 -10.14364 -9.10165 -8.21621 -6.10428 -0.66564 -0.37604 0.47237 1.41230 1.47274 1.52567 1.86790 2.27298 2.64406 2.77014 3.02482 3.10913 3.35492 3.41273 3.65020 3.69847 3.84746 4.24241 4.35857 4.43431 4.53243 4.76831 4.88563 4.91558 5.08929 5.35934 5.40958 5.48711 6.11117 6.88136 6.98346 7.35302 7.50306 8.14179 8.79752 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.006015 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.017884 B = 4654.002177 C = 5405.451570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.016 3.984 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.352 4.352 8 H 0.091 0.909 9 N -0.405 5.405 10 C 0.494 3.506 11 O -0.562 6.562 12 C 0.036 3.964 13 C -0.067 4.067 14 C -0.086 4.086 15 C 0.106 3.894 16 Cl 0.011 6.989 17 N -0.257 5.257 18 N -0.207 5.207 19 C 0.052 3.948 20 C -0.172 4.172 21 C -0.170 4.170 22 H 0.265 0.735 23 H 0.171 0.829 24 H 0.208 0.792 25 H 0.128 0.872 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -11.378 -3.835 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.192 4.192 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.479 4.479 8 H 0.108 0.892 9 N -0.122 5.122 10 C 0.281 3.719 11 O -0.442 6.442 12 C -0.110 4.110 13 C -0.097 4.097 14 C -0.114 4.114 15 C -0.066 4.066 16 Cl 0.039 6.961 17 N -0.102 5.102 18 N -0.054 5.054 19 C -0.053 4.053 20 C -0.210 4.210 21 C -0.208 4.208 22 H 0.074 0.926 23 H 0.188 0.812 24 H 0.224 0.776 25 H 0.145 0.855 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.310 -11.594 -2.960 12.187 hybrid contribution -0.697 1.451 -1.037 1.915 sum -3.007 -10.143 -3.996 11.309 Atomic orbital electron populations 1.69965 1.08109 1.28566 1.41993 1.26215 0.95660 1.02849 0.94513 0.85246 0.78057 0.77391 0.79090 1.20179 1.21007 1.17995 1.19375 0.93360 0.84228 1.50981 0.89152 1.42858 1.37986 1.09157 1.22246 1.17713 0.85260 0.86049 0.82918 1.90597 1.63714 1.35168 1.54742 1.23414 0.96249 0.95454 0.95893 1.22582 0.92314 1.00445 0.94348 1.22545 1.00209 0.88900 0.99790 1.23839 0.96000 0.90566 0.96154 1.98412 1.82186 1.22782 1.92674 1.72964 1.07069 1.17401 1.12723 1.73811 1.18836 0.93760 1.18991 1.22347 0.95106 0.90388 0.97471 1.23242 1.03202 1.01958 0.92555 1.23149 0.97324 0.99706 1.00650 0.92601 0.81168 0.77552 0.85465 0.89237 0.86811 0.86941 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.40 11.28 21.69 0.24 -50.15 15 2 C 0.02 0.86 4.53 84.97 0.39 1.25 15 3 Si 0.98 43.72 29.58 68.60 2.03 45.75 15 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.35 -19.18 7.98 84.12 0.67 -18.50 15 8 H 0.09 4.68 7.21 -2.91 -0.02 4.66 15 9 N -0.41 -21.03 2.83 -616.29 -1.74 -22.77 15 10 C 0.49 25.93 7.03 86.82 0.61 26.54 15 11 O -0.56 -33.03 13.76 -3.95 -0.05 -33.09 15 12 C 0.04 1.50 6.71 41.96 0.28 1.78 15 13 C -0.07 -2.22 9.73 22.77 0.22 -2.00 15 14 C -0.09 -2.07 9.99 22.51 0.22 -1.85 15 15 C 0.11 2.88 7.37 84.76 0.62 3.51 15 16 Cl 0.01 0.24 29.13 -2.72 -0.08 0.16 15 17 N -0.26 -8.79 11.50 -49.72 -0.57 -9.36 15 18 N -0.21 -8.15 7.39 -48.52 -0.36 -8.51 15 19 C 0.05 2.24 4.88 44.99 0.22 2.45 15 20 C -0.17 -6.34 9.80 30.62 0.30 -6.04 15 21 C -0.17 -6.12 10.38 30.62 0.32 -5.80 15 22 H 0.26 15.02 8.31 -92.70 -0.77 14.25 15 23 H 0.17 5.40 7.73 -2.91 -0.02 5.38 15 24 H 0.21 2.89 8.06 -2.91 -0.02 2.87 15 25 H 0.13 5.48 5.78 -2.39 -0.01 5.47 15 26 H 0.09 3.57 6.71 -2.38 -0.02 3.56 15 27 H 0.11 3.49 8.14 -2.39 -0.02 3.47 15 28 H 0.11 3.47 8.14 -2.39 -0.02 3.45 15 29 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 Total: -1.00 -68.48 273.40 4.52 -63.96 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.19 Total: 12.67 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 3.86 Total: 1.34 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.43 Total: -90.79 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.05 Total: -33.09 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -68.48 4.52 -63.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706855572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.755 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds