Wall clock time and date at job start Mon Mar 30 2020 04:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47103 * 17.43265 * 3 2 1 5 5 C 1.36932 * 120.00123 * 95.88526 * 4 3 2 6 6 H 1.08001 * 120.00063 * 162.02604 * 5 4 3 7 7 C 1.38810 * 120.00237 * 341.74867 * 5 4 3 8 8 N 1.31617 * 119.99731 * 337.65667 * 7 5 4 9 9 Si 1.86798 * 120.00264 * 157.66330 * 7 5 4 10 10 H 1.48498 * 109.47300 * 90.00124 * 9 7 5 11 11 H 1.48505 * 109.46852 * 209.99956 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99885 * 9 7 5 13 13 C 1.46507 * 119.99981 * 275.88273 * 4 3 2 14 14 C 1.50698 * 109.46975 * 270.00308 * 13 4 3 15 15 C 1.34299 * 125.45874 * 90.00238 * 14 13 4 16 16 N 1.30639 * 115.78216 * 179.97438 * 15 14 13 17 17 C 1.30601 * 115.91440 * 359.97438 * 16 15 14 18 18 C 1.47104 * 125.54531 * 180.02562 * 17 16 15 19 19 O 1.21546 * 120.00306 * 179.97438 * 18 17 16 20 20 O 1.34825 * 119.99978 * 359.97378 * 18 17 16 21 21 S 1.71074 * 125.45503 * 269.68910 * 14 13 4 22 22 H 1.08996 * 109.47163 * 257.43333 * 3 2 1 23 23 H 1.09004 * 109.47127 * 137.42961 * 3 2 1 24 24 H 0.97001 * 119.99970 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.46647 * 30.00228 * 13 4 3 26 26 H 1.08994 * 109.47180 * 149.99917 * 13 4 3 27 27 H 1.08004 * 122.10110 * 359.93461 * 15 14 13 28 28 H 0.96693 * 117.00211 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3169 -0.4138 5 6 3.4399 -1.5406 -1.7205 6 1 4.0600 -2.3862 -1.9789 7 6 2.9859 -0.6837 -2.7137 8 7 1.9134 0.0512 -2.5090 9 14 3.8968 -0.5739 -4.3408 10 1 3.3370 -1.5695 -5.2897 11 1 3.7394 0.7908 -4.9050 12 1 5.3382 -0.8554 -4.1211 13 6 3.2190 -2.3952 0.5705 14 6 4.5931 -2.3584 1.1880 15 6 4.9345 -1.6683 2.2884 16 7 6.1827 -1.7720 2.6596 17 6 6.9385 -2.5331 1.9145 18 6 8.3682 -2.7986 2.1369 19 8 8.9764 -3.5269 1.3773 20 8 9.0039 -2.2342 3.1833 21 16 5.9662 -3.1951 0.6040 22 1 2.9712 0.2244 1.0030 23 1 2.9710 0.7577 -0.6952 24 1 1.5963 0.6503 -3.2029 25 1 2.4672 -2.2635 1.3487 26 1 3.0676 -3.3556 0.0778 27 1 4.2221 -1.0651 2.8316 28 1 9.9433 -2.4379 3.2882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711436865.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:15 Heat of formation + Delta-G solvation = -8.144994 kcal Electronic energy + Delta-G solvation = -17200.511847 eV Core-core repulsion = 14151.001312 eV Total energy + Delta-G solvation = -3049.510535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32596 -40.36620 -38.26937 -37.14552 -36.25501 -33.97275 -31.88399 -29.36061 -28.36560 -26.21435 -23.97201 -23.39261 -21.21717 -19.51276 -19.11549 -18.55795 -17.79780 -17.33623 -17.16193 -16.87910 -15.73599 -15.68103 -15.53730 -14.93126 -14.48866 -14.33948 -14.03540 -13.51166 -13.42161 -13.13585 -12.84022 -12.69047 -12.65026 -12.26550 -12.11982 -11.97164 -11.87653 -11.74954 -10.96787 -10.68856 -10.41751 -9.85655 -9.15740 -7.98621 -5.37486 -0.84380 0.07192 0.79866 1.10555 1.49492 1.56569 1.62485 2.02296 2.07442 2.30169 2.50380 2.58858 3.23044 3.45716 3.72203 3.85392 4.10743 4.21076 4.37337 4.75655 4.86952 4.99411 5.16741 5.22378 5.38929 5.65870 6.17147 6.49162 6.92769 6.97576 7.32240 7.67813 8.06755 9.07338 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.006078 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.067231 B = 4605.473490 C = 5500.143295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C 0.261 3.739 3 C 0.258 3.742 4 N -0.581 5.581 5 C -0.268 4.268 6 H 0.085 0.915 7 C -0.031 4.031 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.294 1.294 11 H -0.297 1.297 12 H -0.267 1.267 13 C 0.207 3.793 14 C -0.208 4.208 15 C 0.013 3.987 16 N -0.405 5.405 17 C -0.074 4.074 18 C 0.582 3.418 19 O -0.530 6.530 20 O -0.487 6.487 21 S 0.284 5.716 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.251 0.749 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.201 0.799 28 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 -4.545 10.074 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.224 5.224 2 C -0.057 4.057 3 C 0.129 3.871 4 N -0.301 5.301 5 C -0.397 4.397 6 H 0.103 0.897 7 C -0.228 4.228 8 N -0.566 5.566 9 Si 0.782 3.218 10 H -0.221 1.221 11 H -0.224 1.224 12 H -0.192 1.192 13 C 0.079 3.921 14 C -0.334 4.334 15 C -0.145 4.145 16 N -0.123 5.123 17 C -0.344 4.344 18 C 0.423 3.577 19 O -0.420 6.420 20 O -0.300 6.300 21 S 0.539 5.461 22 H 0.127 0.873 23 H 0.112 0.888 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.218 0.782 28 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 10.326 -4.987 9.320 14.777 hybrid contribution 0.470 0.736 -0.807 1.189 sum 10.796 -4.251 8.513 14.391 Atomic orbital electron populations 1.80840 1.15717 1.10940 1.14941 1.30933 0.96690 0.90346 0.87692 1.18457 0.78863 0.89112 1.00695 1.44173 1.73367 1.07406 1.05129 1.19440 1.25264 1.12085 0.82899 0.89717 1.25390 0.96527 1.00426 1.00420 1.70039 1.21460 1.30028 1.35027 0.85503 0.79420 0.76292 0.80550 1.22097 1.22405 1.19212 1.19503 0.87679 0.92643 0.92293 1.27311 1.04630 1.01827 0.99659 1.21953 0.92150 1.03273 0.97160 1.66814 1.04668 1.13372 1.27491 1.26231 0.97490 1.09120 1.01522 1.19028 0.84872 0.75731 0.78051 1.90955 1.67192 1.37045 1.46847 1.84631 1.32072 1.67862 1.45449 1.84053 0.98028 1.40198 1.23860 0.87333 0.88762 0.93905 0.88841 0.90774 0.78247 0.69974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.05 18.54 20.01 0.37 -25.68 15 2 C 0.26 11.32 13.62 89.44 1.22 12.54 15 3 C 0.26 9.57 5.41 84.57 0.46 10.03 15 4 N -0.58 -22.29 2.47 -716.92 -1.77 -24.06 15 5 C -0.27 -11.91 9.64 84.03 0.81 -11.10 15 6 H 0.09 3.66 7.93 -2.91 -0.02 3.64 15 7 C -0.03 -1.48 4.83 84.86 0.41 -1.07 15 8 N -0.92 -47.65 9.56 21.65 0.21 -47.44 15 9 Si 0.95 40.43 29.61 68.60 2.03 42.46 15 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 15 11 H -0.30 -13.03 7.11 99.48 0.71 -12.32 15 12 H -0.27 -10.86 7.11 99.48 0.71 -10.16 15 13 C 0.21 6.19 6.16 85.63 0.53 6.72 15 14 C -0.21 -5.63 5.96 24.78 0.15 -5.48 15 15 C 0.01 0.33 11.13 83.97 0.93 1.26 15 16 N -0.40 -11.43 10.62 -190.42 -2.02 -13.45 15 17 C -0.07 -2.09 7.47 87.20 0.65 -1.44 15 18 C 0.58 14.99 8.33 70.15 0.58 15.58 15 19 O -0.53 -15.46 17.73 19.69 0.35 -15.11 15 20 O -0.49 -9.36 13.42 -57.37 -0.77 -10.13 15 21 S 0.28 7.77 23.00 -56.49 -1.30 6.47 15 22 H 0.11 2.99 8.11 -2.39 -0.02 2.97 15 23 H 0.09 3.93 6.52 -2.38 -0.02 3.91 15 24 H 0.25 13.22 8.31 -92.71 -0.77 12.45 15 25 H 0.09 2.44 8.07 -2.39 -0.02 2.43 15 26 H 0.07 2.23 8.04 -2.39 -0.02 2.21 15 27 H 0.20 4.00 8.06 -2.91 -0.02 3.97 15 28 H 0.44 3.34 9.11 -74.06 -0.67 2.66 15 Total: -1.00 -63.57 282.97 3.39 -60.18 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 0.56 Total: -0.28 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 5.74 Total: 27.04 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -3.22 Total: -110.63 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.42 Total: -25.24 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -1.30 Total: 6.47 kcal Total: -63.57 3.39 -60.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436865.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.037 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds