Wall clock time and date at job start Mon Mar 30 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99603 * 2 1 4 4 C 1.50699 * 109.46763 * 269.99456 * 3 2 1 5 5 H 1.07999 * 120.00366 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00093 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99956 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00400 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47480 * 89.99569 * 8 6 4 10 10 H 1.48505 * 109.47143 * 209.99933 * 8 6 4 11 11 H 1.48503 * 109.47193 * 329.99635 * 8 6 4 12 12 C 1.34774 * 119.99859 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99681 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00188 * 0.02562 * 12 2 1 15 15 S 1.81402 * 109.47232 * 179.97438 * 14 12 2 16 16 C 1.76196 * 103.00121 * 179.97438 * 15 14 12 17 17 C 1.39548 * 120.16296 * 180.30237 * 16 15 14 18 18 C 1.38533 * 117.90046 * 180.24074 * 17 16 15 19 19 C 1.38850 * 118.04501 * 359.46325 * 18 17 16 20 20 N 1.31792 * 120.02857 * 0.27998 * 19 18 17 21 21 N 1.28357 * 122.28875 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47322 * 270.00152 * 1 2 3 23 23 H 1.09002 * 109.47393 * 30.00471 * 1 2 3 24 24 H 1.09001 * 109.47255 * 150.00098 * 1 2 3 25 25 H 1.08996 * 109.47475 * 29.99578 * 3 2 1 26 26 H 1.09002 * 109.46707 * 150.00274 * 3 2 1 27 27 H 0.96993 * 120.00306 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47659 * 59.99452 * 14 12 2 29 29 H 1.09007 * 109.46985 * 299.99557 * 14 12 2 30 30 H 1.07996 * 121.05069 * 359.97438 * 17 16 15 31 31 H 1.08002 * 120.97945 * 179.74468 * 18 17 16 32 32 H 1.07998 * 119.98416 * 180.29794 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5549 3.6172 -0.6733 8 14 3.4376 3.4169 -3.4340 9 1 2.3078 4.2604 -3.9001 10 1 4.6983 4.1993 -3.4969 11 1 3.5540 2.2199 -4.3052 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 16 2.5642 -3.8511 0.0005 16 6 1.5168 -5.2680 0.0013 17 6 2.0703 -6.5490 0.0078 18 6 1.2035 -7.6297 0.0030 19 6 -0.1609 -7.3722 0.0035 20 7 -0.5974 -6.1287 0.0028 21 7 0.1993 -5.1223 0.0022 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6083 2.0284 0.5137 26 1 3.1498 1.1384 0.5138 27 1 4.0317 4.4430 -0.8506 28 1 0.7589 -2.5303 -0.8896 29 1 0.7584 -2.5298 0.8904 30 1 3.1405 -6.6934 0.0121 31 1 1.5780 -8.6427 0.0036 32 1 -0.8647 -8.1913 0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712427501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:38 Heat of formation + Delta-G solvation = 26.958398 kcal Electronic energy + Delta-G solvation = -17076.668085 eV Core-core repulsion = 14164.512843 eV Total energy + Delta-G solvation = -2912.155243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97333 -38.98951 -34.93071 -33.43418 -32.77899 -32.64295 -30.09240 -27.45038 -25.72832 -24.90685 -24.76770 -22.75877 -19.00488 -18.15101 -17.47324 -16.91080 -16.61831 -16.40357 -15.46392 -15.36128 -14.94837 -14.69827 -14.11723 -13.68743 -13.29654 -13.20853 -12.63357 -12.22794 -12.01587 -11.88822 -11.48303 -11.19300 -10.93157 -10.87118 -10.61169 -10.53939 -10.48697 -10.18221 -9.89770 -9.66734 -9.16098 -8.45638 -7.82049 -7.69828 -6.06653 -4.11703 0.53586 0.58232 1.18537 2.10242 3.21718 3.26132 3.29872 3.36575 3.41660 3.86191 4.08477 4.32221 4.42824 4.43304 4.51564 4.78811 4.94742 5.17107 5.28109 5.39651 5.43453 5.60423 5.67648 5.83686 5.90777 6.19695 6.95253 7.37522 7.44673 7.88882 8.18968 8.26101 8.40569 8.79461 8.96145 9.53381 11.01558 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.003855 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.697506 B = 7260.744520 C = 7406.531367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.520 3.480 13 O -0.528 6.528 14 C -0.140 4.140 15 S 0.040 5.960 16 C 0.042 3.958 17 C -0.102 4.102 18 C -0.102 4.102 19 C 0.023 3.977 20 N -0.232 5.232 21 N -0.257 5.257 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 -20.555 2.446 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.304 3.696 13 O -0.406 6.406 14 C -0.291 4.291 15 S 0.279 5.721 16 C -0.213 4.213 17 C -0.137 4.137 18 C -0.132 4.132 19 C -0.146 4.146 20 N -0.073 5.073 21 N -0.105 5.105 22 H 0.067 0.933 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.129 -19.109 2.493 20.222 hybrid contribution -0.187 -0.762 -0.993 1.266 sum -6.317 -19.871 1.500 20.905 Atomic orbital electron populations 1.21733 0.80958 1.02974 1.00840 1.48076 1.06460 1.07300 1.70658 1.19368 0.92623 0.77604 0.97737 1.21422 1.36720 1.06429 0.92191 0.92366 1.24937 0.95249 0.96343 0.97542 1.69929 1.38268 1.14330 1.30784 0.86475 0.77700 0.78617 0.84523 1.20607 1.21037 1.19844 1.19367 0.87722 0.84070 0.78432 1.90717 1.13198 1.86509 1.50133 1.23870 1.01933 0.94967 1.08345 1.86357 1.05715 0.91185 1.88862 1.25469 0.97438 1.00054 0.98312 1.21966 1.02307 0.90998 0.98391 1.22324 0.94206 1.00577 0.96118 1.24209 0.95313 0.96871 0.98224 1.72767 1.29940 0.97376 1.07216 1.73625 1.00530 1.24011 1.12289 0.93324 0.90367 0.92183 0.94640 0.93610 0.92647 0.86374 0.86516 0.82775 0.82876 0.81129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.24 59.85 0.61 1.87 16 2 N -0.59 -12.57 2.86 -182.96 -0.52 -13.09 16 3 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 10.83 7.69 -10.99 -0.08 10.75 16 13 O -0.53 -13.14 15.44 5.56 0.09 -13.05 16 14 C -0.14 -2.20 4.27 36.00 0.15 -2.05 16 15 S 0.04 0.60 21.07 -107.50 -2.26 -1.66 16 16 C 0.04 0.54 7.08 -16.75 -0.12 0.42 16 17 C -0.10 -0.97 9.97 -38.98 -0.39 -1.36 16 18 C -0.10 -0.74 10.20 -39.25 -0.40 -1.14 16 19 C 0.02 0.20 11.31 -17.34 -0.20 0.00 16 20 N -0.23 -2.98 11.49 30.58 0.35 -2.63 16 21 N -0.26 -3.65 10.61 31.49 0.33 -3.32 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 24 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 25 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 26 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.12 1.74 7.40 -51.92 -0.38 1.35 16 29 H 0.12 1.63 8.11 -51.92 -0.42 1.21 16 30 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -34.56 300.33 -6.24 -40.80 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -3.60 Total: -3.86 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.87 Total: 1.22 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.90 Total: -44.83 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.26 Total: -1.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.56 -6.24 -40.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712427501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.761 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds