Wall clock time and date at job start Mon Mar 30 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99603 * 2 1 4 4 C 1.50699 * 109.46763 * 269.99456 * 3 2 1 5 5 H 1.07999 * 120.00366 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00093 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99956 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00400 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47480 * 89.99569 * 8 6 4 10 10 H 1.48505 * 109.47143 * 209.99933 * 8 6 4 11 11 H 1.48503 * 109.47193 * 329.99635 * 8 6 4 12 12 C 1.34774 * 119.99859 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99681 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00188 * 0.02562 * 12 2 1 15 15 S 1.81402 * 109.47232 * 179.97438 * 14 12 2 16 16 C 1.76196 * 103.00121 * 179.97438 * 15 14 12 17 17 C 1.39548 * 120.16296 * 180.30237 * 16 15 14 18 18 C 1.38533 * 117.90046 * 180.24074 * 17 16 15 19 19 C 1.38850 * 118.04501 * 359.46325 * 18 17 16 20 20 N 1.31792 * 120.02857 * 0.27998 * 19 18 17 21 21 N 1.28357 * 122.28875 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47322 * 270.00152 * 1 2 3 23 23 H 1.09002 * 109.47393 * 30.00471 * 1 2 3 24 24 H 1.09001 * 109.47255 * 150.00098 * 1 2 3 25 25 H 1.08996 * 109.47475 * 29.99578 * 3 2 1 26 26 H 1.09002 * 109.46707 * 150.00274 * 3 2 1 27 27 H 0.96993 * 120.00306 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47659 * 59.99452 * 14 12 2 29 29 H 1.09007 * 109.46985 * 299.99557 * 14 12 2 30 30 H 1.07996 * 121.05069 * 359.97438 * 17 16 15 31 31 H 1.08002 * 120.97945 * 179.74468 * 18 17 16 32 32 H 1.07998 * 119.98416 * 180.29794 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5549 3.6172 -0.6733 8 14 3.4376 3.4169 -3.4340 9 1 2.3078 4.2604 -3.9001 10 1 4.6983 4.1993 -3.4969 11 1 3.5540 2.2199 -4.3052 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 16 2.5642 -3.8511 0.0005 16 6 1.5168 -5.2680 0.0013 17 6 2.0703 -6.5490 0.0078 18 6 1.2035 -7.6297 0.0030 19 6 -0.1609 -7.3722 0.0035 20 7 -0.5974 -6.1287 0.0028 21 7 0.1993 -5.1223 0.0022 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6083 2.0284 0.5137 26 1 3.1498 1.1384 0.5138 27 1 4.0317 4.4430 -0.8506 28 1 0.7589 -2.5303 -0.8896 29 1 0.7584 -2.5298 0.8904 30 1 3.1405 -6.6934 0.0121 31 1 1.5780 -8.6427 0.0036 32 1 -0.8647 -8.1913 0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712427501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:37 Heat of formation + Delta-G solvation = 2.679423 kcal Electronic energy + Delta-G solvation = -17077.720901 eV Core-core repulsion = 14164.512843 eV Total energy + Delta-G solvation = -2913.208058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.77177 -40.68402 -36.71142 -34.79683 -34.16676 -33.54453 -31.66457 -29.24162 -27.33291 -25.71534 -25.58378 -24.72443 -20.49702 -19.19614 -18.73372 -18.35534 -17.99986 -17.63759 -17.04625 -16.79131 -16.20873 -16.01985 -15.49413 -14.73249 -14.63638 -14.36123 -14.02516 -13.85132 -13.62162 -13.48830 -13.16290 -12.83987 -12.58357 -12.32298 -12.22135 -11.78646 -11.73085 -11.49011 -11.22660 -10.89008 -10.72204 -10.65152 -9.53640 -8.86192 -8.24281 -6.39098 -0.20151 -0.15018 0.10586 0.99973 1.36575 1.39543 1.49638 1.60873 2.24541 2.41154 2.49561 3.05696 3.30779 3.52667 3.60394 3.82726 3.92022 3.93600 4.17390 4.20667 4.40636 4.66972 4.79889 4.91189 4.92097 4.95935 5.18913 5.24987 5.50308 5.76504 6.02437 6.55916 6.69961 7.17154 7.34244 7.59479 8.83173 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.003855 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.697506 B = 7260.744520 C = 7406.531367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.260 3.740 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.513 3.487 13 O -0.578 6.578 14 C -0.119 4.119 15 S 0.003 5.997 16 C 0.031 3.969 17 C -0.108 4.108 18 C -0.080 4.080 19 C 0.030 3.970 20 N -0.271 5.271 21 N -0.288 5.288 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.029 0.971 26 H 0.003 0.997 27 H 0.268 0.732 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.175 0.825 31 H 0.204 0.796 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 -23.259 1.553 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.299 3.701 13 O -0.459 6.459 14 C -0.270 4.270 15 S 0.240 5.760 16 C -0.225 4.225 17 C -0.142 4.142 18 C -0.111 4.111 19 C -0.139 4.139 20 N -0.112 5.112 21 N -0.134 5.134 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.193 0.807 31 H 0.221 0.779 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.481 -21.831 1.607 23.134 hybrid contribution 0.153 -0.124 -0.660 0.689 sum -7.329 -21.955 0.947 23.165 Atomic orbital electron populations 1.22012 0.77557 1.04216 1.02975 1.48072 1.08565 1.05996 1.70520 1.18845 0.91257 0.79765 0.96287 1.21692 1.37100 1.06736 0.92942 0.92830 1.25855 0.94780 0.96355 1.02054 1.70044 1.38787 1.14796 1.33050 0.85397 0.78127 0.78206 0.78980 1.18784 1.20511 1.19824 1.20147 0.87450 0.85474 0.77003 1.90682 1.15605 1.87489 1.52126 1.23585 1.01385 0.92318 1.09722 1.86393 1.06905 0.92373 1.90342 1.25288 0.97141 0.99925 1.00152 1.22358 1.03949 0.90177 0.97688 1.22889 0.93080 1.02072 0.93027 1.24952 0.97090 0.96391 0.95430 1.72695 1.30377 0.98808 1.09287 1.73508 1.01037 1.25409 1.13458 0.90697 0.90828 0.89225 0.95270 0.97931 0.92299 0.85145 0.84635 0.80711 0.77930 0.77224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.30 10.24 127.77 1.31 3.61 16 2 N -0.60 -26.01 2.86 -851.15 -2.43 -28.44 16 3 C 0.26 14.13 5.16 85.63 0.44 14.58 16 4 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.51 5.46 84.66 0.46 0.97 16 7 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 8 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 12 C 0.51 21.96 7.69 87.66 0.67 22.64 16 13 O -0.58 -30.22 15.44 -3.03 -0.05 -30.27 16 14 C -0.12 -3.74 4.27 71.23 0.30 -3.44 16 15 S 0.00 0.08 21.07 -56.49 -1.19 -1.11 16 16 C 0.03 0.76 7.08 84.90 0.60 1.36 16 17 C -0.11 -1.76 9.97 22.66 0.23 -1.54 16 18 C -0.08 -0.80 10.20 22.49 0.23 -0.57 16 19 C 0.03 0.41 11.31 84.85 0.96 1.37 16 20 N -0.27 -6.43 11.49 -57.18 -0.66 -7.09 16 21 N -0.29 -7.84 10.61 -54.28 -0.58 -8.42 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 24 H 0.09 2.23 6.44 -2.39 -0.02 2.22 16 25 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 26 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.13 3.74 7.40 -2.39 -0.02 3.72 16 29 H 0.14 3.70 8.11 -2.39 -0.02 3.68 16 30 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.20 0.01 8.06 -2.91 -0.02 -0.02 16 32 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -79.37 300.33 3.99 -75.39 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.13 Total: 1.27 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.45 Total: 7.43 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -3.38 Total: -99.95 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.19 Total: -1.11 kcal Total: -79.37 3.99 -75.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712427501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.067 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds