Wall clock time and date at job start Mon Mar 30 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31282 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48495 * 109.47267 * 89.99741 * 3 2 1 5 5 H 1.48498 * 109.46844 * 210.00115 * 3 2 1 6 6 H 1.48498 * 109.47069 * 329.99964 * 3 2 1 7 7 C 1.39178 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99407 * 195.20144 * 7 2 1 9 9 N 1.36690 * 120.00196 * 15.20180 * 7 2 1 10 10 C 1.34775 * 120.00137 * 46.22480 * 9 7 2 11 11 O 1.21547 * 119.99614 * 354.12924 * 10 9 7 12 12 C 1.48236 * 120.00126 * 174.12284 * 10 9 7 13 13 C 1.39583 * 120.55129 * 174.82420 * 12 10 9 14 14 C 1.38882 * 118.24195 * 179.78446 * 13 12 10 15 15 Cl 1.73602 * 120.43776 * 180.24025 * 14 13 12 16 16 N 1.32371 * 119.12822 * 0.49575 * 14 13 12 17 17 C 1.31878 * 121.03491 * 359.74159 * 16 14 13 18 18 N 1.31560 * 121.94188 * 0.02562 * 17 16 14 19 19 C 1.46500 * 119.99835 * 226.22546 * 9 7 2 20 20 C 1.52999 * 117.49817 * 3.99308 * 19 9 7 21 21 C 1.52996 * 117.50029 * 295.32814 * 19 9 7 22 22 H 0.97003 * 119.99909 * 354.97300 * 1 2 3 23 23 H 1.08004 * 120.87714 * 0.02562 * 13 12 10 24 24 H 1.08002 * 119.02983 * 179.97438 * 17 16 14 25 25 H 1.09007 * 115.54702 * 149.65764 * 19 9 7 26 26 H 1.09000 * 117.50122 * 359.97438 * 20 19 9 27 27 H 1.09000 * 117.49963 * 145.02478 * 20 19 9 28 28 H 1.09001 * 117.49704 * 214.97912 * 21 19 9 29 29 H 1.08997 * 117.49731 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0464 1.4000 5 1 3.5444 1.4400 -0.7001 6 1 1.4443 2.6526 -0.7000 7 6 2.0086 -1.2054 0.0005 8 1 3.0603 -1.2216 0.2458 9 7 1.3610 -2.3685 -0.3093 10 6 0.5461 -2.4211 -1.3815 11 8 0.3029 -1.4096 -2.0101 12 6 -0.0535 -3.7125 -1.7942 13 6 -0.9822 -3.7631 -2.8350 14 6 -1.5102 -4.9990 -3.1851 15 17 -2.6646 -5.1287 -4.4751 16 7 -1.1254 -6.0762 -2.5188 17 6 -0.2492 -5.9914 -1.5369 18 7 0.2805 -4.8431 -1.1740 19 6 1.5528 -3.5581 0.5240 20 6 2.4153 -3.4098 1.7790 21 6 2.9531 -4.1731 0.5659 22 1 -0.4850 0.8368 0.0736 23 1 -1.2793 -2.8655 -3.3569 24 1 0.0416 -6.8910 -1.0147 25 1 0.7025 -4.2383 0.5751 26 1 2.8404 -2.4274 1.9844 27 1 2.1329 -3.9929 2.6555 28 1 3.0241 -5.2579 0.6449 29 1 3.7315 -3.6929 -0.0270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723212412.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:39 Heat of formation + Delta-G solvation = 49.062242 kcal Electronic energy + Delta-G solvation = -18007.359705 eV Core-core repulsion = 14958.286156 eV Total energy + Delta-G solvation = -3049.073549 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.23112 -40.17038 -38.01589 -37.81074 -35.05616 -34.67174 -33.01607 -32.81420 -27.92106 -25.90044 -25.40483 -23.15492 -22.77906 -21.88301 -19.63541 -18.79495 -17.91555 -17.22795 -16.71769 -16.45061 -16.42830 -16.00721 -15.41196 -15.23346 -15.00051 -14.56738 -13.74997 -13.49064 -13.00197 -12.94325 -12.72653 -12.66420 -12.21975 -12.14135 -12.03687 -11.61225 -11.50804 -11.17550 -10.90378 -10.72748 -10.58176 -9.91917 -9.04015 -8.26985 -6.09631 -0.59102 -0.32850 0.40834 1.38575 1.45430 1.53273 2.05405 2.25604 2.62363 2.83206 3.03780 3.10922 3.22353 3.44894 3.53875 3.84991 4.16398 4.31934 4.42662 4.45089 4.62402 4.96526 5.03000 5.16982 5.41050 5.46229 5.54367 5.58604 6.12014 6.75208 6.88414 7.04516 7.50386 8.14569 8.78662 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.006734 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.576401 B = 4156.871116 C = 5183.200560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.020 3.980 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.290 1.290 7 C -0.355 4.355 8 H 0.090 0.910 9 N -0.401 5.401 10 C 0.485 3.515 11 O -0.567 6.567 12 C 0.163 3.837 13 C -0.177 4.177 14 C 0.223 3.777 15 Cl 0.003 6.997 16 N -0.520 5.520 17 C 0.312 3.688 18 N -0.493 5.493 19 C 0.056 3.944 20 C -0.180 4.180 21 C -0.168 4.168 22 H 0.265 0.735 23 H 0.153 0.847 24 H 0.254 0.746 25 H 0.141 0.859 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -11.850 -1.163 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.216 1.216 7 C -0.483 4.483 8 H 0.107 0.893 9 N -0.118 5.118 10 C 0.273 3.727 11 O -0.448 6.448 12 C 0.016 3.984 13 C -0.202 4.202 14 C 0.049 3.951 15 Cl 0.032 6.968 16 N -0.238 5.238 17 C 0.025 3.975 18 N -0.211 5.211 19 C -0.049 4.049 20 C -0.218 4.218 21 C -0.206 4.206 22 H 0.075 0.925 23 H 0.171 0.829 24 H 0.270 0.730 25 H 0.158 0.842 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.423 -12.015 -1.160 12.078 hybrid contribution -0.284 1.841 -0.667 1.979 sum -0.707 -10.174 -1.827 10.361 Atomic orbital electron populations 1.69908 1.08297 1.28367 1.42309 1.26254 0.95608 1.02985 0.94008 0.85180 0.78329 0.77574 0.78694 1.18579 1.18890 1.21601 1.19334 0.94037 0.84200 1.50738 0.89257 1.42817 1.39400 1.09519 1.20034 1.17947 0.85596 0.86181 0.82989 1.90609 1.62827 1.35225 1.56109 1.22052 0.91351 0.93899 0.91101 1.22564 0.98525 0.99346 0.99762 1.21968 0.92061 0.89444 0.91611 1.98419 1.55452 1.98281 1.44684 1.67855 1.15168 1.31529 1.09209 1.26043 0.86199 0.96681 0.88562 1.68916 1.25954 0.98717 1.27470 1.22498 0.96220 0.90234 0.95931 1.23251 1.04174 1.01865 0.92478 1.23152 0.96506 1.00101 1.00875 0.92534 0.82898 0.73041 0.84177 0.89945 0.86690 0.86073 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.66 11.49 21.70 0.25 -50.41 15 2 C 0.02 1.09 4.49 85.00 0.38 1.47 15 3 Si 0.98 43.77 29.58 68.60 2.03 45.80 15 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 15 5 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 15 7 C -0.36 -19.12 7.85 84.16 0.66 -18.46 15 8 H 0.09 4.59 7.37 -2.91 -0.02 4.57 15 9 N -0.40 -20.22 2.81 -616.00 -1.73 -21.95 15 10 C 0.49 25.36 7.06 86.90 0.61 25.97 15 11 O -0.57 -33.99 13.94 -3.86 -0.05 -34.04 15 12 C 0.16 6.76 6.66 41.92 0.28 7.04 15 13 C -0.18 -6.58 9.53 22.75 0.22 -6.37 15 14 C 0.22 6.90 7.34 84.77 0.62 7.52 15 15 Cl 0.00 0.08 29.16 -2.72 -0.08 0.00 15 16 N -0.52 -14.75 10.42 -190.92 -1.99 -16.74 15 17 C 0.31 8.03 12.27 180.93 2.22 10.25 15 18 N -0.49 -16.56 6.35 -189.25 -1.20 -17.76 15 19 C 0.06 2.20 4.96 44.99 0.22 2.42 15 20 C -0.18 -6.17 9.81 30.62 0.30 -5.87 15 21 C -0.17 -5.40 10.35 30.62 0.32 -5.09 15 22 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 23 H 0.15 5.89 7.74 -2.91 -0.02 5.86 15 24 H 0.25 3.71 8.06 -2.91 -0.02 3.69 15 25 H 0.14 5.24 5.70 -2.38 -0.01 5.23 15 26 H 0.08 3.19 6.79 -2.39 -0.02 3.17 15 27 H 0.11 3.18 8.14 -2.39 -0.02 3.16 15 28 H 0.12 3.01 8.14 -2.39 -0.02 2.99 15 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 Total: -1.00 -68.45 273.78 4.25 -64.19 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.19 Total: 12.00 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 5.83 Total: 18.91 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.67 Total: -106.86 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Total: -68.45 4.25 -64.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723212412.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.257 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds