Wall clock time and date at job start Mon Mar 30 2020 04:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31276 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48496 * 109.47050 * 89.99714 * 3 2 1 5 5 H 1.48498 * 109.47182 * 210.00259 * 3 2 1 6 6 H 1.48505 * 109.46874 * 330.00064 * 3 2 1 7 7 C 1.39181 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99907 * 194.49306 * 7 2 1 9 9 N 1.36679 * 120.00492 * 14.49508 * 7 2 1 10 10 C 1.34782 * 119.99834 * 42.49611 * 9 7 2 11 11 O 1.21541 * 119.99710 * 4.55688 * 10 9 7 12 12 C 1.48235 * 119.99639 * 184.55257 * 10 9 7 13 13 C 1.39674 * 120.54693 * 173.59844 * 12 10 9 14 14 C 1.38670 * 118.28379 * 179.71716 * 13 12 10 15 15 N 1.32245 * 119.18120 * 0.56028 * 14 13 12 16 16 C 1.32008 * 121.04486 * 359.72077 * 15 14 13 17 17 Cl 1.73609 * 119.05514 * 180.02562 * 16 15 14 18 18 N 1.31700 * 121.89201 * 359.97438 * 16 15 14 19 19 C 1.46501 * 120.00060 * 222.49908 * 9 7 2 20 20 C 1.52998 * 117.50014 * 1.68999 * 19 9 7 21 21 C 1.52993 * 117.49920 * 293.02737 * 19 9 7 22 22 H 0.97001 * 120.00108 * 354.97200 * 1 2 3 23 23 H 1.07999 * 120.85259 * 359.97438 * 13 12 10 24 24 H 1.08004 * 120.40823 * 180.30533 * 14 13 12 25 25 H 1.09006 * 115.54657 * 147.35562 * 19 9 7 26 26 H 1.08999 * 117.49792 * 0.02562 * 20 19 9 27 27 H 1.08997 * 117.49751 * 145.01419 * 20 19 9 28 28 H 1.09006 * 117.49729 * 214.97677 * 21 19 9 29 29 H 1.08997 * 117.50086 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0464 1.4000 5 1 3.5443 1.4401 -0.7001 6 1 1.4442 2.6527 -0.7001 7 6 2.0086 -1.2054 -0.0005 8 1 3.0629 -1.2204 0.2336 9 7 1.3579 -2.3701 -0.2973 10 6 0.4745 -2.4082 -1.3146 11 8 0.3175 -1.4309 -2.0199 12 6 -0.3055 -3.6419 -1.5730 13 6 -1.3171 -3.6536 -2.5360 14 6 -2.0131 -4.8349 -2.7436 15 7 -1.7065 -5.8994 -2.0213 16 6 -0.7483 -5.8538 -1.1144 17 17 -0.3883 -7.2822 -0.1957 18 7 -0.0570 -4.7561 -0.8872 19 6 1.6206 -3.5771 0.4903 20 6 2.6040 -3.4596 1.6565 21 6 3.0127 -4.2023 0.3819 22 1 -0.4850 0.8368 0.0736 23 1 -1.5483 -2.7666 -3.1071 24 1 -2.7987 -4.8838 -3.4831 25 1 0.7736 -4.2524 0.6122 26 1 3.0552 -2.4842 1.8380 27 1 2.4042 -4.0579 2.5454 28 1 3.0818 -5.2890 0.4330 29 1 3.7331 -3.7159 -0.2757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723326260.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:06 Heat of formation + Delta-G solvation = 69.625662 kcal Electronic energy + Delta-G solvation = -18151.822451 eV Core-core repulsion = 15103.640599 eV Total energy + Delta-G solvation = -3048.181852 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77107 -38.42594 -36.71193 -36.04804 -33.67284 -33.03427 -31.39384 -30.97332 -26.14360 -24.48075 -23.75331 -21.66543 -21.19584 -20.21537 -17.95562 -17.31797 -16.17542 -15.68515 -15.29112 -15.06333 -14.81719 -14.28057 -13.88554 -13.59474 -13.13406 -12.86897 -11.98771 -11.69925 -11.36577 -11.33621 -11.09032 -10.99835 -10.78051 -10.76020 -10.44183 -10.28378 -9.95335 -9.76155 -9.15320 -9.03061 -8.80415 -8.20978 -7.19643 -6.35858 -4.04749 0.91541 1.10125 1.60360 3.18184 3.27282 3.29874 3.58935 4.01120 4.24437 4.44857 4.54430 4.81291 4.89600 5.06477 5.20510 5.33478 5.58195 5.84244 5.88846 5.92739 6.20104 6.33909 6.38579 6.58196 6.92514 7.04196 7.13174 7.37840 7.97736 8.06786 8.77713 8.92404 9.37959 10.04566 10.70928 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025362 B = 0.007258 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.736788 B = 3856.862014 C = 4739.820325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.062 3.938 3 Si 0.923 3.077 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.326 4.326 8 H 0.089 0.911 9 N -0.386 5.386 10 C 0.500 3.500 11 O -0.527 6.527 12 C 0.182 3.818 13 C -0.185 4.185 14 C 0.155 3.845 15 N -0.521 5.521 16 C 0.351 3.649 17 Cl 0.009 6.991 18 N -0.485 5.485 19 C 0.068 3.932 20 C -0.186 4.186 21 C -0.198 4.198 22 H 0.271 0.729 23 H 0.161 0.839 24 H 0.176 0.824 25 H 0.151 0.849 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -9.116 -0.832 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.151 4.151 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.454 4.454 8 H 0.107 0.893 9 N -0.103 5.103 10 C 0.287 3.713 11 O -0.405 6.405 12 C 0.036 3.964 13 C -0.209 4.209 14 C -0.009 4.009 15 N -0.240 5.240 16 C 0.057 3.943 17 Cl 0.037 6.963 18 N -0.206 5.206 19 C -0.037 4.037 20 C -0.223 4.223 21 C -0.236 4.236 22 H 0.081 0.919 23 H 0.179 0.821 24 H 0.193 0.807 25 H 0.167 0.833 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.373 -9.384 -0.668 9.507 hybrid contribution 0.147 1.254 -0.214 1.281 sum -1.226 -8.130 -0.881 8.269 Atomic orbital electron populations 1.69764 1.06804 1.28290 1.39784 1.25391 0.95052 0.99893 0.94718 0.86020 0.79719 0.81347 0.78023 1.20450 1.19261 1.20634 1.19197 0.93716 0.83145 1.49339 0.89334 1.42720 1.36215 1.07726 1.23634 1.17089 0.85608 0.85003 0.83584 1.90632 1.67464 1.34105 1.48293 1.22635 0.92136 0.92518 0.89154 1.22966 0.96793 1.01021 1.00075 1.23119 0.96438 0.86700 0.94689 1.67700 1.16506 1.32299 1.07489 1.23038 0.90508 0.89179 0.91532 1.98402 1.93396 1.33769 1.70776 1.68494 1.27485 0.98742 1.25851 1.22841 0.93904 0.90939 0.96059 1.23166 1.05191 1.02144 0.91827 1.23175 1.00643 0.98523 1.01307 0.91890 0.82107 0.80660 0.83296 0.87951 0.89731 0.89672 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.01 11.43 55.51 0.63 -22.37 15 2 C 0.06 1.66 4.51 -17.44 -0.08 1.58 15 3 Si 0.92 20.75 29.58 -169.99 -5.03 15.72 15 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.33 -8.62 8.05 -15.04 -0.12 -8.74 15 8 H 0.09 2.23 7.07 -52.48 -0.37 1.86 15 9 N -0.39 -9.75 2.84 -108.67 -0.31 -10.06 15 10 C 0.50 12.81 6.82 -12.15 -0.08 12.73 15 11 O -0.53 -15.01 14.15 5.33 0.08 -14.94 15 12 C 0.18 3.87 6.70 -82.64 -0.55 3.32 15 13 C -0.19 -3.26 9.72 -38.89 -0.38 -3.64 15 14 C 0.15 2.25 11.30 -17.21 -0.19 2.05 15 15 N -0.52 -8.51 10.39 -11.66 -0.12 -8.63 15 16 C 0.35 6.12 8.17 -92.05 -0.75 5.36 15 17 Cl 0.01 0.13 29.27 -51.86 -1.52 -1.39 15 18 N -0.48 -9.48 6.11 -8.23 -0.05 -9.53 15 19 C 0.07 1.45 5.26 -67.93 -0.36 1.09 15 20 C -0.19 -3.47 9.79 -26.69 -0.26 -3.73 15 21 C -0.20 -3.63 10.38 -26.70 -0.28 -3.91 15 22 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.16 2.72 7.75 -52.49 -0.41 2.31 15 24 H 0.18 1.73 8.06 -52.48 -0.42 1.31 15 25 H 0.15 3.14 5.14 -53.14 -0.27 2.86 15 26 H 0.10 2.03 6.64 -51.93 -0.34 1.68 15 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 LS Contribution 273.19 15.07 4.12 4.12 Total: -1.00 -30.58 273.19 -7.48 -38.06 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.22 Total: 2.90 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -3.06 Total: 6.12 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.15 Total: -50.60 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.58 -7.48 -38.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723326260.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.688 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds