Wall clock time and date at job start Mon Mar 30 2020 04:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31276 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48496 * 109.47050 * 89.99714 * 3 2 1 5 5 H 1.48498 * 109.47182 * 210.00259 * 3 2 1 6 6 H 1.48505 * 109.46874 * 330.00064 * 3 2 1 7 7 C 1.39181 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99907 * 194.49306 * 7 2 1 9 9 N 1.36679 * 120.00492 * 14.49508 * 7 2 1 10 10 C 1.34782 * 119.99834 * 42.49611 * 9 7 2 11 11 O 1.21541 * 119.99710 * 4.55688 * 10 9 7 12 12 C 1.48235 * 119.99639 * 184.55257 * 10 9 7 13 13 C 1.39674 * 120.54693 * 173.59844 * 12 10 9 14 14 C 1.38670 * 118.28379 * 179.71716 * 13 12 10 15 15 N 1.32245 * 119.18120 * 0.56028 * 14 13 12 16 16 C 1.32008 * 121.04486 * 359.72077 * 15 14 13 17 17 Cl 1.73609 * 119.05514 * 180.02562 * 16 15 14 18 18 N 1.31700 * 121.89201 * 359.97438 * 16 15 14 19 19 C 1.46501 * 120.00060 * 222.49908 * 9 7 2 20 20 C 1.52998 * 117.50014 * 1.68999 * 19 9 7 21 21 C 1.52993 * 117.49920 * 293.02737 * 19 9 7 22 22 H 0.97001 * 120.00108 * 354.97200 * 1 2 3 23 23 H 1.07999 * 120.85259 * 359.97438 * 13 12 10 24 24 H 1.08004 * 120.40823 * 180.30533 * 14 13 12 25 25 H 1.09006 * 115.54657 * 147.35562 * 19 9 7 26 26 H 1.08999 * 117.49792 * 0.02562 * 20 19 9 27 27 H 1.08997 * 117.49751 * 145.01419 * 20 19 9 28 28 H 1.09006 * 117.49729 * 214.97677 * 21 19 9 29 29 H 1.08997 * 117.50086 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0464 1.4000 5 1 3.5443 1.4401 -0.7001 6 1 1.4442 2.6527 -0.7001 7 6 2.0086 -1.2054 -0.0005 8 1 3.0629 -1.2204 0.2336 9 7 1.3579 -2.3701 -0.2973 10 6 0.4745 -2.4082 -1.3146 11 8 0.3175 -1.4309 -2.0199 12 6 -0.3055 -3.6419 -1.5730 13 6 -1.3171 -3.6536 -2.5360 14 6 -2.0131 -4.8349 -2.7436 15 7 -1.7065 -5.8994 -2.0213 16 6 -0.7483 -5.8538 -1.1144 17 17 -0.3883 -7.2822 -0.1957 18 7 -0.0570 -4.7561 -0.8872 19 6 1.6206 -3.5771 0.4903 20 6 2.6040 -3.4596 1.6565 21 6 3.0127 -4.2023 0.3819 22 1 -0.4850 0.8368 0.0736 23 1 -1.5483 -2.7666 -3.1071 24 1 -2.7987 -4.8838 -3.4831 25 1 0.7736 -4.2524 0.6122 26 1 3.0552 -2.4842 1.8380 27 1 2.4042 -4.0579 2.5454 28 1 3.0818 -5.2890 0.4330 29 1 3.7331 -3.7159 -0.2757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723326260.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:05 Heat of formation + Delta-G solvation = 50.690092 kcal Electronic energy + Delta-G solvation = -18152.643559 eV Core-core repulsion = 15103.640599 eV Total energy + Delta-G solvation = -3049.002960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.22636 -40.17920 -38.01254 -37.75637 -35.19243 -34.83342 -32.91804 -32.75329 -27.93787 -26.03649 -25.23367 -23.22550 -22.81815 -21.93465 -19.63360 -18.72511 -17.95208 -17.32959 -16.72155 -16.59344 -16.49831 -15.93709 -15.49419 -15.12577 -14.90489 -14.49593 -13.75367 -13.16643 -13.02295 -12.84165 -12.74806 -12.54700 -12.28378 -12.24357 -12.09924 -11.89817 -11.66130 -11.24783 -10.90656 -10.62225 -10.50463 -9.88170 -9.07768 -8.31844 -6.08208 -0.56226 -0.23008 0.30092 1.37959 1.44776 1.53001 2.03439 2.25697 2.63584 2.82621 3.03031 3.08107 3.39211 3.50319 3.63074 3.88731 4.13223 4.30948 4.38645 4.51148 4.67256 4.88279 5.03271 5.10841 5.37318 5.43964 5.52552 5.64331 6.07006 6.62371 6.85395 7.02847 7.49048 8.14297 8.76067 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025362 B = 0.007258 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.736788 B = 3856.862014 C = 4739.820325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.351 4.351 8 H 0.090 0.910 9 N -0.403 5.403 10 C 0.490 3.510 11 O -0.570 6.570 12 C 0.154 3.846 13 C -0.184 4.184 14 C 0.183 3.817 15 N -0.514 5.514 16 C 0.342 3.658 17 Cl 0.036 6.964 18 N -0.493 5.493 19 C 0.039 3.961 20 C -0.176 4.176 21 C -0.177 4.177 22 H 0.267 0.733 23 H 0.164 0.836 24 H 0.233 0.767 25 H 0.153 0.847 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -11.148 -1.038 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.213 1.213 7 C -0.478 4.478 8 H 0.107 0.893 9 N -0.120 5.120 10 C 0.279 3.721 11 O -0.451 6.451 12 C 0.009 3.991 13 C -0.208 4.208 14 C 0.018 3.982 15 N -0.232 5.232 16 C 0.048 3.952 17 Cl 0.064 6.936 18 N -0.213 5.213 19 C -0.065 4.065 20 C -0.213 4.213 21 C -0.215 4.215 22 H 0.077 0.923 23 H 0.182 0.818 24 H 0.250 0.750 25 H 0.170 0.830 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.746 -11.448 -0.826 11.609 hybrid contribution 0.185 1.614 -0.227 1.640 sum -1.562 -9.833 -1.052 10.012 Atomic orbital electron populations 1.69875 1.08255 1.28546 1.42616 1.26236 0.95730 1.03045 0.94184 0.85101 0.78257 0.77259 0.78669 1.18659 1.18921 1.21344 1.19399 0.94036 0.84213 1.50188 0.89265 1.42906 1.36357 1.08562 1.24168 1.17761 0.85423 0.85958 0.82991 1.90570 1.68709 1.36171 1.49674 1.22124 0.93725 0.91760 0.91507 1.23150 0.96027 1.02613 0.98961 1.23982 0.95752 0.84506 0.93952 1.67911 1.15676 1.32623 1.07005 1.23376 0.90405 0.89437 0.91947 1.98412 1.93267 1.31791 1.70160 1.68325 1.28192 0.98895 1.25928 1.22988 0.95365 0.90336 0.97833 1.23220 1.03488 1.01984 0.92641 1.23164 0.98019 0.99888 1.00429 0.92337 0.81819 0.75041 0.83047 0.89515 0.86777 0.86806 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.63 11.43 21.70 0.25 -50.38 15 2 C 0.02 0.87 4.51 85.00 0.38 1.25 15 3 Si 0.98 43.87 29.58 68.60 2.03 45.90 15 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 15 5 H -0.26 -11.48 7.11 99.48 0.71 -10.78 15 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 15 7 C -0.35 -19.16 8.05 84.16 0.68 -18.48 15 8 H 0.09 4.66 7.07 -2.91 -0.02 4.64 15 9 N -0.40 -20.95 2.84 -615.99 -1.75 -22.70 15 10 C 0.49 25.95 6.82 86.90 0.59 26.54 15 11 O -0.57 -33.87 14.15 -3.84 -0.05 -33.92 15 12 C 0.15 6.55 6.70 41.95 0.28 6.83 15 13 C -0.18 -6.22 9.72 22.72 0.22 -6.00 15 14 C 0.18 4.63 11.30 84.73 0.96 5.59 15 15 N -0.51 -14.97 10.39 -190.80 -1.98 -16.96 15 16 C 0.34 11.08 8.17 180.85 1.48 12.56 15 17 Cl 0.04 0.95 29.27 -2.72 -0.08 0.87 15 18 N -0.49 -18.74 6.11 -179.96 -1.10 -19.84 15 19 C 0.04 1.67 5.26 44.99 0.24 1.91 15 20 C -0.18 -6.42 9.79 30.62 0.30 -6.12 15 21 C -0.18 -6.27 10.38 30.62 0.32 -5.96 15 22 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 23 H 0.16 5.41 7.75 -2.91 -0.02 5.39 15 24 H 0.23 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.15 6.32 5.14 -4.78 -0.02 6.29 15 26 H 0.09 3.45 6.64 -2.39 -0.02 3.44 15 27 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 28 H 0.11 3.36 8.14 -2.38 -0.02 3.34 15 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 15 Total: -1.00 -69.35 273.19 3.94 -65.41 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.18 Total: 13.50 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 5.45 Total: 18.13 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.59 Total: -109.88 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.05 Total: -33.92 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: 0.95 SS G_CDS: -0.08 Total: 0.87 kcal Total: -69.35 3.94 -65.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723326260.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.099 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds