Wall clock time and date at job start Mon Mar 30 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47198 * 2 1 4 4 C 1.50698 * 109.47032 * 120.01010 * 2 1 3 5 5 H 1.07996 * 120.00015 * 120.00240 * 4 2 1 6 6 C 1.37880 * 119.99762 * 299.98994 * 4 2 1 7 7 N 1.31514 * 119.99925 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47055 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46986 * 120.00365 * 8 6 4 11 11 H 1.48500 * 109.47002 * 240.00433 * 8 6 4 12 12 N 1.46508 * 109.46793 * 240.00407 * 2 1 3 13 13 C 1.46496 * 120.00289 * 300.00118 * 12 2 1 14 14 S 1.65599 * 119.99549 * 120.00197 * 12 2 1 15 15 O 1.42104 * 104.27372 * 153.92830 * 14 12 2 16 16 O 1.42092 * 104.27895 * 26.07085 * 14 12 2 17 17 C 1.81399 * 104.44948 * 269.99744 * 14 12 2 18 18 Cl 1.80304 * 115.55082 * 325.67447 * 17 14 12 19 19 C 1.53000 * 117.50045 * 180.02562 * 17 14 12 20 20 C 1.53002 * 60.02940 * 252.49963 * 19 17 14 21 21 H 1.09001 * 109.47691 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46782 * 299.99611 * 1 2 3 23 23 H 1.08996 * 109.47149 * 59.99442 * 1 2 3 24 24 H 0.97003 * 119.99940 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47040 * 270.00129 * 13 12 2 26 26 H 1.09000 * 109.46898 * 30.00011 * 13 12 2 27 27 H 1.08993 * 109.47384 * 149.99487 * 13 12 2 28 28 H 1.09002 * 117.49833 * 0.02562 * 19 17 14 29 29 H 1.09002 * 117.49953 * 145.00109 * 19 17 14 30 30 H 1.09000 * 117.49996 * 107.50493 * 20 19 17 31 31 H 1.08999 * 117.49664 * 252.51862 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1482 -2.2862 3.6035 10 1 3.1474 -0.1864 4.8159 11 1 1.1678 -1.5871 4.8163 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4283 14 16 2.9703 0.1144 -2.2863 15 8 3.7314 -0.9105 -2.9106 16 8 3.6004 1.1302 -1.5181 17 6 1.7963 0.8415 -3.4624 18 17 0.3200 -0.1389 -3.7943 19 6 2.3711 1.6653 -4.6165 20 6 1.6486 2.3651 -3.4636 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7084 1.1606 3.4845 25 1 2.4156 -2.7376 -0.9720 26 1 0.6903 -2.3001 -0.9849 27 1 1.6236 -2.2850 -2.5004 28 1 3.4548 1.7699 -4.6693 29 1 1.8566 1.6147 -5.5761 30 1 2.2570 2.9305 -2.7577 31 1 0.6587 2.7746 -3.6647 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725701145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:17 Heat of formation + Delta-G solvation = -42.242171 kcal Electronic energy + Delta-G solvation = -17484.523054 eV Core-core repulsion = 14534.641449 eV Total energy + Delta-G solvation = -2949.881605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.44706 -36.73200 -36.20723 -35.60046 -35.24123 -32.56190 -29.05321 -25.57596 -25.13952 -23.21424 -22.82055 -20.60447 -18.35000 -17.43107 -16.81392 -16.23727 -15.64821 -15.25028 -14.52948 -13.75736 -13.52007 -13.10201 -12.80409 -12.50252 -12.07801 -11.92691 -11.83579 -11.63966 -11.58185 -11.53160 -11.33715 -11.19824 -10.96145 -10.77013 -10.45864 -10.25133 -10.10841 -10.06246 -9.87478 -9.20045 -8.43380 -7.92478 -6.05040 -4.10842 0.59872 1.79343 2.90405 3.29649 3.35968 3.38197 3.43986 4.03782 4.27293 4.39027 4.44056 4.96753 5.00802 5.26239 5.26981 5.59604 5.63851 5.75581 6.22712 6.40690 6.66537 6.83088 6.86902 7.06173 7.45363 7.66604 7.81815 8.07119 8.30371 8.91591 9.54437 11.00668 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.007386 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.376438 B = 3789.889114 C = 3901.300642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.964 5.964 13 C 0.110 3.890 14 S 2.634 3.366 15 O -0.953 6.953 16 O -0.932 6.932 17 C -0.583 4.583 18 Cl -0.078 7.078 19 C -0.132 4.132 20 C -0.119 4.119 21 H 0.033 0.967 22 H 0.092 0.908 23 H 0.014 0.986 24 H 0.262 0.738 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 1.183 -12.389 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.805 5.805 13 C -0.036 4.036 14 S 2.718 3.282 15 O -0.944 6.944 16 O -0.922 6.922 17 C -0.691 4.691 18 Cl -0.051 7.051 19 C -0.170 4.170 20 C -0.157 4.157 21 H 0.052 0.948 22 H 0.110 0.890 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.450 1.290 -12.322 12.397 hybrid contribution -0.700 -0.454 0.543 0.995 sum -1.150 0.837 -11.778 11.864 Atomic orbital electron populations 1.22120 0.98125 0.99853 1.00748 1.18795 0.91399 0.93051 0.80194 0.92270 1.21359 1.31365 1.12919 0.89838 0.91810 1.24899 0.95025 0.95046 0.98947 1.69871 1.36683 1.22805 1.23602 0.86443 0.78584 0.79684 0.82714 1.19722 1.20948 1.21034 1.57293 1.70160 1.19373 1.33654 1.21210 1.01703 0.81518 0.99179 1.04596 0.74937 0.74643 0.73981 1.93546 1.66933 1.55194 1.78679 1.93628 1.71806 1.61325 1.65426 1.36361 1.07556 1.04194 1.20970 1.98697 1.38778 1.71644 1.95931 1.23212 1.01380 0.98432 0.93999 1.23310 1.04386 0.87413 1.00547 0.94764 0.88967 0.96659 0.92810 0.93043 0.90863 0.93009 0.86774 0.86182 0.85298 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.95 37.16 0.33 -3.02 16 2 C 0.27 6.47 2.57 -69.08 -0.18 6.30 16 3 H 0.06 1.56 6.87 -51.93 -0.36 1.20 16 4 C -0.51 -13.80 8.37 -34.44 -0.29 -14.09 16 5 H 0.06 1.71 7.65 -52.49 -0.40 1.31 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.96 -20.07 2.60 -115.86 -0.30 -20.37 16 13 C 0.11 2.02 9.00 59.84 0.54 2.56 16 14 S 2.63 50.49 5.61 -107.50 -0.60 49.89 16 15 O -0.95 -19.49 17.09 -57.54 -0.98 -20.48 16 16 O -0.93 -20.42 15.86 -57.54 -0.91 -21.33 16 17 C -0.58 -8.68 3.31 -26.70 -0.09 -8.76 16 18 Cl -0.08 -1.14 27.89 -51.86 -1.45 -2.59 16 19 C -0.13 -1.47 10.13 -26.73 -0.27 -1.74 16 20 C -0.12 -1.46 10.01 -26.69 -0.27 -1.72 16 21 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 22 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.30 6.43 -51.93 -0.33 0.96 16 27 H 0.05 0.83 7.29 -51.93 -0.38 0.45 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.13 1.60 7.67 -51.93 -0.40 1.20 16 31 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -30.67 286.52 -8.42 -39.08 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.78 Total: -1.79 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.32 Total: -18.88 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.33 Total: -44.31 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.90 Total: -41.81 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 50.49 SS G_CDS: -0.60 Total: 49.89 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.45 Total: -2.59 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.67 -8.42 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725701145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.157 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds