Wall clock time and date at job start Mon Mar 30 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47198 * 2 1 4 4 C 1.50698 * 109.47032 * 120.01010 * 2 1 3 5 5 H 1.07996 * 120.00015 * 120.00240 * 4 2 1 6 6 C 1.37880 * 119.99762 * 299.98994 * 4 2 1 7 7 N 1.31514 * 119.99925 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47055 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46986 * 120.00365 * 8 6 4 11 11 H 1.48500 * 109.47002 * 240.00433 * 8 6 4 12 12 N 1.46508 * 109.46793 * 240.00407 * 2 1 3 13 13 C 1.46496 * 120.00289 * 300.00118 * 12 2 1 14 14 S 1.65599 * 119.99549 * 120.00197 * 12 2 1 15 15 O 1.42104 * 104.27372 * 153.92830 * 14 12 2 16 16 O 1.42092 * 104.27895 * 26.07085 * 14 12 2 17 17 C 1.81399 * 104.44948 * 269.99744 * 14 12 2 18 18 Cl 1.80304 * 115.55082 * 325.67447 * 17 14 12 19 19 C 1.53000 * 117.50045 * 180.02562 * 17 14 12 20 20 C 1.53002 * 60.02940 * 252.49963 * 19 17 14 21 21 H 1.09001 * 109.47691 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46782 * 299.99611 * 1 2 3 23 23 H 1.08996 * 109.47149 * 59.99442 * 1 2 3 24 24 H 0.97003 * 119.99940 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47040 * 270.00129 * 13 12 2 26 26 H 1.09000 * 109.46898 * 30.00011 * 13 12 2 27 27 H 1.08993 * 109.47384 * 149.99487 * 13 12 2 28 28 H 1.09002 * 117.49833 * 0.02562 * 19 17 14 29 29 H 1.09002 * 117.49953 * 145.00109 * 19 17 14 30 30 H 1.09000 * 117.49996 * 107.50493 * 20 19 17 31 31 H 1.08999 * 117.49664 * 252.51862 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1482 -2.2862 3.6035 10 1 3.1474 -0.1864 4.8159 11 1 1.1678 -1.5871 4.8163 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4283 14 16 2.9703 0.1144 -2.2863 15 8 3.7314 -0.9105 -2.9106 16 8 3.6004 1.1302 -1.5181 17 6 1.7963 0.8415 -3.4624 18 17 0.3200 -0.1389 -3.7943 19 6 2.3711 1.6653 -4.6165 20 6 1.6486 2.3651 -3.4636 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7084 1.1606 3.4845 25 1 2.4156 -2.7376 -0.9720 26 1 0.6903 -2.3001 -0.9849 27 1 1.6236 -2.2850 -2.5004 28 1 3.4548 1.7699 -4.6693 29 1 1.8566 1.6147 -5.5761 30 1 2.2570 2.9305 -2.7577 31 1 0.6587 2.7746 -3.6647 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725701145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:17 Heat of formation + Delta-G solvation = -62.833221 kcal Electronic energy + Delta-G solvation = -17485.415949 eV Core-core repulsion = 14534.641449 eV Total energy + Delta-G solvation = -2950.774500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.58211 -38.26014 -37.91887 -37.13645 -36.44335 -34.50941 -30.88012 -27.25964 -27.03391 -24.47769 -23.73628 -22.38653 -19.83664 -18.87103 -18.53934 -17.94119 -17.16106 -16.69261 -16.23723 -15.23491 -14.99382 -14.67891 -14.55681 -13.78177 -13.63581 -13.45867 -13.34442 -13.14647 -13.00639 -12.84976 -12.74804 -12.68435 -12.58592 -12.53889 -12.21251 -12.13049 -11.90640 -11.23100 -11.18215 -11.07625 -10.47639 -9.61079 -8.09356 -6.21766 -0.87601 0.59871 1.42160 1.45001 1.55296 1.68678 2.06149 2.45750 2.75799 3.00987 3.18953 3.30946 3.59595 4.07471 4.15980 4.44258 4.70316 4.71396 4.84718 4.88144 5.04155 5.07619 5.17237 5.19603 5.64433 5.74889 5.90483 6.15951 6.33919 6.85248 7.46440 8.94873 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.007386 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.376438 B = 3789.889114 C = 3901.300642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.032 0.968 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.979 5.979 13 C 0.107 3.893 14 S 2.639 3.361 15 O -0.974 6.974 16 O -0.970 6.970 17 C -0.597 4.597 18 Cl -0.072 7.072 19 C -0.105 4.105 20 C -0.114 4.114 21 H 0.039 0.961 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.264 0.736 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 1.340 -13.891 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.171 3.829 3 H 0.049 0.951 4 C -0.575 4.575 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.818 5.818 13 C -0.039 4.039 14 S 2.730 3.270 15 O -0.964 6.964 16 O -0.961 6.961 17 C -0.711 4.711 18 Cl -0.045 7.045 19 C -0.144 4.144 20 C -0.152 4.152 21 H 0.058 0.942 22 H 0.085 0.915 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.142 0.858 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.989 1.400 -13.783 13.889 hybrid contribution -0.522 -0.460 0.888 1.128 sum -1.511 0.940 -12.894 13.016 Atomic orbital electron populations 1.21903 0.96885 1.00070 1.00529 1.18432 0.92143 0.91551 0.80752 0.95069 1.21663 1.31428 1.12902 0.91471 0.92785 1.25590 0.95292 0.95755 1.01463 1.69973 1.37307 1.23656 1.24207 0.85582 0.78245 0.78596 0.79643 1.19683 1.20910 1.20062 1.57159 1.70236 1.20480 1.33966 1.21322 1.01575 0.80358 1.00626 1.04008 0.75011 0.73895 0.74081 1.93516 1.68140 1.56015 1.78752 1.93582 1.73449 1.61962 1.67084 1.35627 1.07486 1.05399 1.22577 1.98700 1.38207 1.71760 1.95803 1.23605 1.02676 0.94040 0.94082 1.23543 1.05835 0.84890 1.00940 0.94235 0.91487 0.94412 0.92665 0.93930 0.90413 0.90731 0.85221 0.83161 0.85807 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.95 71.98 0.64 -5.38 16 2 C 0.28 13.46 2.57 44.24 0.11 13.57 16 3 H 0.03 1.70 6.87 -2.39 -0.02 1.68 16 4 C -0.53 -29.16 8.37 25.60 0.21 -28.94 16 5 H 0.05 2.97 7.65 -2.91 -0.02 2.94 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -50.89 11.32 21.45 0.24 -50.65 16 8 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.98 -40.79 2.60 -520.46 -1.36 -42.14 16 13 C 0.11 3.88 9.00 127.77 1.15 5.03 16 14 S 2.64 100.24 5.61 -56.49 -0.32 99.93 16 15 O -0.97 -39.42 17.09 -127.65 -2.18 -41.60 16 16 O -0.97 -43.26 15.86 -127.65 -2.02 -45.29 16 17 C -0.60 -16.39 3.31 30.62 0.10 -16.29 16 18 Cl -0.07 -1.93 27.89 -2.72 -0.08 -2.00 16 19 C -0.11 -1.95 10.13 30.60 0.31 -1.64 16 20 C -0.11 -2.48 10.01 30.62 0.31 -2.17 16 21 H 0.04 1.68 6.66 -2.39 -0.02 1.66 16 22 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 2.71 6.43 -2.39 -0.02 2.70 16 27 H 0.07 2.31 7.29 -2.39 -0.02 2.30 16 28 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.12 2.87 7.67 -2.39 -0.02 2.85 16 31 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -66.26 286.52 0.74 -65.53 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.13 Total: 4.99 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 3.29 Total: -34.35 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -1.11 Total: -92.79 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: -4.21 Total: -86.88 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 100.24 SS G_CDS: -0.32 Total: 99.93 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.00 kcal Total: -66.26 0.74 -65.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725701145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.696 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds