Wall clock time and date at job start Mon Mar 30 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.46940 * 239.99896 * 2 1 3 5 5 H 1.07999 * 119.99877 * 240.00078 * 4 2 1 6 6 C 1.37877 * 119.99647 * 60.00210 * 4 2 1 7 7 N 1.31516 * 120.00549 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47303 * 90.00025 * 8 6 4 10 10 H 1.48506 * 109.47054 * 209.99549 * 8 6 4 11 11 H 1.48503 * 109.47185 * 329.99573 * 8 6 4 12 12 N 1.46498 * 109.47070 * 120.00118 * 2 1 3 13 13 N 1.40109 * 119.99760 * 269.71824 * 12 2 1 14 14 C 1.29933 * 119.99828 * 180.27595 * 13 12 2 15 15 C 1.46866 * 120.00188 * 180.02562 * 14 13 12 16 16 C 1.34692 * 125.05686 * 180.02562 * 15 14 13 17 17 C 1.39482 * 113.57382 * 179.97438 * 16 15 14 18 18 C 1.47249 * 122.97757 * 179.97438 * 17 16 15 19 19 N 1.34776 * 120.00284 * 180.02562 * 18 17 16 20 20 O 1.21630 * 120.00464 * 359.97438 * 18 17 16 21 21 C 1.36280 * 114.04548 * 359.97438 * 17 16 15 22 22 S 1.70590 * 110.59201 * 359.75051 * 21 17 16 23 23 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46576 * 300.00118 * 1 2 3 25 25 H 1.08994 * 109.47252 * 59.99913 * 1 2 3 26 26 H 0.96993 * 119.99987 * 180.02562 * 7 6 4 27 27 H 0.97001 * 120.00384 * 90.00306 * 12 2 1 28 28 H 1.08002 * 120.00392 * 0.02562 * 14 13 12 29 29 H 1.08004 * 123.20925 * 359.97438 * 16 15 14 30 30 H 0.97001 * 119.99654 * 359.97438 * 19 18 17 31 31 H 0.96996 * 120.00601 * 180.02562 * 19 18 17 32 32 H 1.07993 * 124.70084 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1124 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1961 13 7 2.2574 0.0310 2.3731 14 6 2.6956 -0.5807 3.4324 15 6 2.9458 0.1755 4.6663 16 6 3.3990 -0.3531 5.8193 17 6 3.5514 0.5842 6.8409 18 6 4.0330 0.2316 8.1869 19 7 4.1572 1.1865 9.1299 20 8 4.3178 -0.9217 8.4482 21 6 3.2150 1.8554 6.4828 22 16 2.7066 1.9057 4.8552 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7081 1.1608 -3.4844 27 1 2.1800 -1.6468 1.1722 28 1 2.8760 -1.6452 3.4056 29 1 3.6229 -1.4027 5.9411 30 1 3.9297 2.1062 8.9217 31 1 4.4748 0.9543 10.0165 32 1 3.2677 2.7128 7.1373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771887919.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:33 Heat of formation + Delta-G solvation = 27.190829 kcal Electronic energy + Delta-G solvation = -16612.223990 eV Core-core repulsion = 13700.078826 eV Total energy + Delta-G solvation = -2912.145164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85298 -37.27806 -36.33077 -34.21746 -33.79647 -31.67072 -29.68086 -27.11329 -25.35929 -25.19000 -22.74104 -20.55657 -20.35530 -19.14036 -18.20425 -17.03806 -16.93290 -16.09042 -15.78803 -15.01275 -14.90529 -14.59390 -13.83829 -13.31009 -13.10490 -12.88063 -12.55482 -12.50275 -12.30004 -11.52177 -11.10959 -11.08072 -10.90187 -10.68176 -10.32700 -10.27269 -10.12076 -9.91276 -9.70915 -9.15062 -8.91879 -8.56135 -8.50760 -6.90466 -6.19623 -4.28374 0.59110 1.58045 1.75444 2.03458 3.07206 3.21030 3.27605 3.29706 3.36737 3.47541 3.67360 4.31471 4.80617 4.92420 5.13061 5.22663 5.38021 5.76043 5.96222 6.08206 6.32518 6.56479 6.60903 6.83168 6.92424 7.06751 7.13516 7.49512 7.68694 7.77611 8.05082 8.09995 8.20298 8.77997 9.15026 9.38725 10.86280 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.047240 B = 0.003215 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.570467 B = 8708.377679 C = 9001.931223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.295 3.705 3 H 0.043 0.957 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.613 5.613 13 N -0.194 5.194 14 C 0.008 3.992 15 C -0.114 4.114 16 C -0.101 4.101 17 C -0.148 4.148 18 C 0.584 3.416 19 N -0.853 5.853 20 O -0.543 6.543 21 C -0.251 4.251 22 S 0.257 5.743 23 H 0.027 0.973 24 H 0.013 0.987 25 H 0.091 0.909 26 H 0.265 0.735 27 H 0.372 0.628 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.400 0.600 31 H 0.403 0.597 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 3.985 17.921 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.061 0.939 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.350 5.350 13 N -0.009 5.009 14 C -0.201 4.201 15 C -0.234 4.234 16 C -0.133 4.133 17 C -0.167 4.167 18 C 0.369 3.631 19 N -0.417 5.417 20 O -0.421 6.421 21 C -0.391 4.391 22 S 0.524 5.476 23 H 0.046 0.954 24 H 0.032 0.968 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.208 0.792 28 H 0.134 0.866 29 H 0.169 0.831 30 H 0.228 0.772 31 H 0.234 0.766 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.656 5.458 16.181 17.282 hybrid contribution 1.059 -2.368 0.644 2.672 sum 3.715 3.091 16.825 17.506 Atomic orbital electron populations 1.22212 0.98794 0.99345 1.00665 1.18611 0.90284 0.93631 0.78117 0.93881 1.21221 1.32456 1.13386 0.90135 0.92112 1.24856 0.94767 0.94960 0.98987 1.69881 1.35910 1.22472 1.24036 0.86410 0.79226 0.79285 0.81983 1.20482 1.20967 1.19834 1.49108 1.71312 1.07935 1.06641 1.73957 1.04308 1.28364 0.94228 1.22539 1.10195 0.96773 0.90569 1.22540 1.07664 0.96774 0.96446 1.20109 1.01954 1.01034 0.90214 1.18848 1.09205 0.93161 0.95471 1.17773 0.76395 0.84770 0.84212 1.43691 1.71003 1.11666 1.15324 1.90824 1.50294 1.19500 1.81466 1.25827 1.08845 1.00689 1.03772 1.83540 1.58532 1.04219 1.01302 0.95411 0.96798 0.89013 0.92475 0.79166 0.86622 0.83107 0.77154 0.76638 0.81718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.29 37.16 0.35 -3.28 16 2 C 0.30 7.34 3.23 -69.08 -0.22 7.12 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 4 C -0.53 -14.03 8.74 -34.44 -0.30 -14.33 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.22 11.32 55.43 0.63 -23.59 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 N -0.61 -13.20 6.10 -5.88 -0.04 -13.24 16 13 N -0.19 -3.82 11.24 32.04 0.36 -3.46 16 14 C 0.01 0.13 10.91 -14.87 -0.16 -0.03 16 15 C -0.11 -1.65 6.37 -37.35 -0.24 -1.89 16 16 C -0.10 -1.38 9.74 -40.37 -0.39 -1.77 16 17 C -0.15 -1.78 5.82 -106.48 -0.62 -2.40 16 18 C 0.58 6.97 8.06 -12.60 -0.10 6.87 16 19 N -0.85 -6.04 8.84 30.39 0.27 -5.78 16 20 O -0.54 -8.63 17.53 5.25 0.09 -8.54 16 21 C -0.25 -2.47 10.39 30.03 0.31 -2.15 16 22 S 0.26 3.16 22.79 -107.50 -2.45 0.71 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.37 7.39 8.58 -182.59 -1.57 5.82 16 28 H 0.12 1.72 8.03 -52.49 -0.42 1.30 16 29 H 0.15 2.01 7.99 -52.48 -0.42 1.59 16 30 H 0.40 1.68 7.28 -40.82 -0.30 1.38 16 31 H 0.40 2.26 8.93 -40.82 -0.36 1.90 16 32 H 0.17 0.97 6.97 -52.49 -0.37 0.61 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -30.83 300.92 -7.66 -38.49 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.56 Total: 5.61 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.48 Total: -10.18 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 1.22 Total: -46.07 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.45 Total: 0.71 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.83 -7.66 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887919.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.682 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds