Wall clock time and date at job start Mon Mar 30 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.46940 * 239.99896 * 2 1 3 5 5 H 1.07999 * 119.99877 * 240.00078 * 4 2 1 6 6 C 1.37877 * 119.99647 * 60.00210 * 4 2 1 7 7 N 1.31516 * 120.00549 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47303 * 90.00025 * 8 6 4 10 10 H 1.48506 * 109.47054 * 209.99549 * 8 6 4 11 11 H 1.48503 * 109.47185 * 329.99573 * 8 6 4 12 12 N 1.46498 * 109.47070 * 120.00118 * 2 1 3 13 13 N 1.40109 * 119.99760 * 269.71824 * 12 2 1 14 14 C 1.29933 * 119.99828 * 180.27595 * 13 12 2 15 15 C 1.46866 * 120.00188 * 180.02562 * 14 13 12 16 16 C 1.34692 * 125.05686 * 180.02562 * 15 14 13 17 17 C 1.39482 * 113.57382 * 179.97438 * 16 15 14 18 18 C 1.47249 * 122.97757 * 179.97438 * 17 16 15 19 19 N 1.34776 * 120.00284 * 180.02562 * 18 17 16 20 20 O 1.21630 * 120.00464 * 359.97438 * 18 17 16 21 21 C 1.36280 * 114.04548 * 359.97438 * 17 16 15 22 22 S 1.70590 * 110.59201 * 359.75051 * 21 17 16 23 23 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46576 * 300.00118 * 1 2 3 25 25 H 1.08994 * 109.47252 * 59.99913 * 1 2 3 26 26 H 0.96993 * 119.99987 * 180.02562 * 7 6 4 27 27 H 0.97001 * 120.00384 * 90.00306 * 12 2 1 28 28 H 1.08002 * 120.00392 * 0.02562 * 14 13 12 29 29 H 1.08004 * 123.20925 * 359.97438 * 16 15 14 30 30 H 0.97001 * 119.99654 * 359.97438 * 19 18 17 31 31 H 0.96996 * 120.00601 * 180.02562 * 19 18 17 32 32 H 1.07993 * 124.70084 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1124 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1961 13 7 2.2574 0.0310 2.3731 14 6 2.6956 -0.5807 3.4324 15 6 2.9458 0.1755 4.6663 16 6 3.3990 -0.3531 5.8193 17 6 3.5514 0.5842 6.8409 18 6 4.0330 0.2316 8.1869 19 7 4.1572 1.1865 9.1299 20 8 4.3178 -0.9217 8.4482 21 6 3.2150 1.8554 6.4828 22 16 2.7066 1.9057 4.8552 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7081 1.1608 -3.4844 27 1 2.1800 -1.6468 1.1722 28 1 2.8760 -1.6452 3.4056 29 1 3.6229 -1.4027 5.9411 30 1 3.9297 2.1062 8.9217 31 1 4.4748 0.9543 10.0165 32 1 3.2677 2.7128 7.1373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771887919.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:33 Heat of formation + Delta-G solvation = 4.071711 kcal Electronic energy + Delta-G solvation = -16613.226510 eV Core-core repulsion = 13700.078826 eV Total energy + Delta-G solvation = -2913.147684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79064 -38.49799 -37.72403 -35.87771 -34.72446 -33.37421 -31.03431 -28.61628 -27.29768 -26.22808 -24.00684 -22.22347 -21.60045 -20.12450 -19.37988 -18.41158 -17.93902 -17.36129 -17.22003 -16.75577 -15.85746 -15.76125 -15.32358 -14.65229 -14.49737 -14.31089 -13.87814 -13.76290 -13.50534 -13.28582 -12.91159 -12.71513 -12.45992 -12.23026 -12.10182 -12.10021 -11.23983 -11.09849 -10.94678 -10.68517 -10.59921 -10.09229 -9.51998 -8.43388 -8.17998 -6.35479 -0.39973 0.57670 0.68279 1.04634 1.43256 1.43534 1.53972 1.87008 2.09189 2.44437 2.46104 2.67927 3.10585 3.89059 4.11691 4.16689 4.36118 4.53172 4.73541 4.80199 4.97810 5.03250 5.12221 5.25939 5.34614 5.52935 5.75042 5.85398 5.92038 6.14759 6.37688 6.46711 6.82273 7.34636 7.35905 7.67046 8.86408 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.047240 B = 0.003215 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.570467 B = 8708.377679 C = 9001.931223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.307 3.693 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.635 5.635 13 N -0.239 5.239 14 C 0.048 3.952 15 C -0.161 4.161 16 C -0.083 4.083 17 C -0.174 4.174 18 C 0.583 3.417 19 N -0.827 5.827 20 O -0.592 6.592 21 C -0.204 4.204 22 S 0.260 5.740 23 H 0.030 0.970 24 H 0.019 0.981 25 H 0.070 0.930 26 H 0.267 0.733 27 H 0.376 0.624 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.417 0.583 31 H 0.414 0.586 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 4.674 19.854 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.204 3.796 3 H 0.023 0.977 4 C -0.589 4.589 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.372 5.372 13 N -0.050 5.050 14 C -0.162 4.162 15 C -0.281 4.281 16 C -0.116 4.116 17 C -0.192 4.192 18 C 0.368 3.632 19 N -0.391 5.391 20 O -0.473 6.473 21 C -0.344 4.344 22 S 0.527 5.473 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.213 0.787 28 H 0.146 0.854 29 H 0.166 0.834 30 H 0.249 0.751 31 H 0.246 0.754 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.373 6.195 18.147 19.470 hybrid contribution 0.922 -2.473 0.405 2.671 sum 4.295 3.722 18.552 19.403 Atomic orbital electron populations 1.22030 0.98653 0.99141 0.99826 1.18155 0.90335 0.91726 0.79424 0.97719 1.21524 1.32607 1.13542 0.91186 0.92120 1.25676 0.94870 0.95610 1.01832 1.70002 1.36755 1.23631 1.24731 0.85395 0.78741 0.78206 0.78280 1.19755 1.20626 1.19493 1.48551 1.74073 1.07783 1.06813 1.73979 1.07955 1.28640 0.94445 1.23040 1.05248 0.97735 0.90207 1.22460 1.11237 0.98318 0.96039 1.20272 0.99691 1.01410 0.90258 1.18882 1.11024 0.93665 0.95589 1.17769 0.76094 0.84712 0.84634 1.43466 1.69062 1.11723 1.14871 1.90811 1.52781 1.21562 1.82195 1.26324 1.04060 1.01255 1.02752 1.83659 1.58293 1.02538 1.02832 0.95132 0.96144 0.91138 0.92335 0.78690 0.85360 0.83438 0.75093 0.75400 0.76970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.81 9.29 71.98 0.67 -6.14 16 2 C 0.31 15.86 3.23 44.25 0.14 16.00 16 3 H 0.00 0.28 8.14 -2.39 -0.02 0.27 16 4 C -0.55 -29.65 8.74 25.60 0.22 -29.43 16 5 H 0.06 3.19 7.79 -2.91 -0.02 3.16 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.07 11.32 21.45 0.24 -50.83 16 8 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.64 -28.19 6.10 -172.52 -1.05 -29.25 16 13 N -0.24 -9.61 11.24 -52.54 -0.59 -10.20 16 14 C 0.05 1.59 10.91 87.23 0.95 2.54 16 15 C -0.16 -4.48 6.37 23.72 0.15 -4.33 16 16 C -0.08 -2.14 9.74 21.76 0.21 -1.92 16 17 C -0.17 -3.69 5.82 -21.07 -0.12 -3.81 16 18 C 0.58 12.39 8.06 86.61 0.70 13.09 16 19 N -0.83 -8.56 8.84 -176.00 -1.56 -10.11 16 20 O -0.59 -18.08 17.53 -4.13 -0.07 -18.16 16 21 C -0.20 -3.16 10.39 67.36 0.70 -2.46 16 22 S 0.26 5.83 22.79 -56.49 -1.29 4.54 16 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 26 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.38 15.38 8.58 -213.31 -1.83 13.55 16 28 H 0.13 3.76 8.03 -2.91 -0.02 3.74 16 29 H 0.15 3.82 7.99 -2.91 -0.02 3.80 16 30 H 0.42 1.39 7.28 -92.71 -0.68 0.71 16 31 H 0.41 3.21 8.93 -92.71 -0.83 2.38 16 32 H 0.21 1.15 6.97 -2.91 -0.02 1.13 16 Total: -1.00 -69.03 300.92 -0.36 -69.39 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -2.15 Total: 15.23 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.07 Total: -14.89 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -2.96 Total: -100.38 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.07 Total: -18.16 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.29 Total: 4.54 kcal Total: -69.03 -0.36 -69.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887919.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.463 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds