Wall clock time and date at job start Mon Mar 30 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36215 * 116.99782 * 2 1 4 4 C 1.34082 * 122.50002 * 359.71563 * 3 2 1 5 5 S 1.70602 * 110.97236 * 179.85325 * 4 3 2 6 6 C 1.75814 * 91.62119 * 0.33943 * 5 4 3 7 7 C 1.46546 * 125.42711 * 179.80754 * 6 5 4 8 8 O 1.21711 * 119.99980 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00154 * 0.02562 * 7 6 5 10 10 C 1.47065 * 136.05229 * 359.62232 * 9 7 6 11 11 C 1.53237 * 88.08218 * 207.21038 * 10 9 7 12 12 C 1.50708 * 114.32394 * 220.47503 * 11 10 9 13 13 H 1.07998 * 119.99941 * 93.76146 * 12 11 10 14 14 C 1.37873 * 119.99727 * 273.75639 * 12 11 10 15 15 N 1.31514 * 119.99754 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00235 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.46915 * 90.00117 * 16 14 12 18 18 H 1.48504 * 109.47242 * 210.00111 * 16 14 12 19 19 H 1.48499 * 109.47048 * 330.00190 * 16 14 12 20 20 C 1.47065 * 136.06044 * 180.02562 * 9 7 6 21 21 C 1.36739 * 109.14720 * 359.80560 * 6 5 4 22 22 H 1.08999 * 109.47144 * 59.99874 * 1 2 3 23 23 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47198 * 299.99567 * 1 2 3 25 25 H 1.07999 * 124.51294 * 359.96381 * 4 3 2 26 26 H 1.08996 * 113.47282 * 321.94007 * 10 9 7 27 27 H 1.09004 * 113.46618 * 92.38218 * 10 9 7 28 28 H 1.08999 * 114.02079 * 87.71649 * 11 10 9 29 29 H 0.97006 * 119.99967 * 179.97438 * 15 14 12 30 30 H 1.09008 * 113.46159 * 267.61561 * 20 9 7 31 31 H 1.08991 * 113.46630 * 38.05315 * 20 9 7 32 32 H 1.07999 * 123.37001 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3690 -0.0056 5 16 2.4294 3.7036 0.0002 6 6 3.8353 2.6479 0.0001 7 6 5.2316 3.0927 0.0001 8 8 6.1314 2.2731 0.0005 9 7 5.5195 4.4094 0.0006 10 6 4.7486 5.6618 -0.0054 11 6 5.9397 6.3315 -0.6988 12 6 6.2436 7.7226 -0.2051 13 1 6.9737 7.8706 0.5769 14 6 5.5897 8.8063 -0.7518 15 7 5.8552 10.0203 -0.3213 16 14 4.3264 8.5503 -2.1038 17 1 2.9841 8.3609 -1.4977 18 1 4.3048 9.7397 -2.9928 19 1 4.6861 7.3468 -2.8959 20 6 6.7426 5.2260 0.0004 21 6 3.4183 1.3457 0.0001 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2895 2.4445 -0.0111 26 1 3.8545 5.6183 -0.6273 27 1 4.5501 6.0542 0.9921 28 1 5.9226 6.2517 -1.7857 29 1 5.3954 10.7828 -0.7061 30 1 7.0810 5.5010 0.9994 31 1 7.5403 4.8126 -0.6166 32 1 4.0961 0.5049 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473483.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:41 Heat of formation + Delta-G solvation = -15.366300 kcal Electronic energy + Delta-G solvation = -17553.484955 eV Core-core repulsion = 14607.201625 eV Total energy + Delta-G solvation = -2946.283330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38598 -40.76668 -38.99195 -36.77505 -34.67923 -31.95863 -30.28099 -28.79352 -27.41009 -26.89257 -24.92234 -22.45382 -21.10547 -20.18383 -19.35778 -18.92740 -18.12944 -17.40264 -16.94205 -16.77730 -16.64666 -15.91175 -15.48491 -15.23860 -14.79046 -14.28845 -14.09002 -13.88113 -13.68305 -13.51213 -13.44855 -12.79304 -12.65315 -12.56123 -11.95358 -11.93125 -11.80879 -11.63532 -11.24144 -11.07070 -10.66319 -10.12967 -9.68654 -9.10376 -8.26131 -6.34614 -0.66644 0.35639 0.85588 1.27371 1.42253 1.46435 1.53949 1.69062 2.03193 2.39511 2.42637 3.02884 3.40304 3.87834 3.95070 4.08712 4.22968 4.37519 4.38546 4.40828 4.46959 4.55301 4.66551 4.73578 4.74004 4.79099 4.87572 5.02959 5.36005 5.59147 6.22906 6.28968 6.63613 6.73500 6.92249 7.33110 8.89047 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.005336 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.246209 B = 5246.138175 C = 6007.525029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.090 3.910 4 C -0.333 4.333 5 S 0.265 5.735 6 C -0.259 4.259 7 C 0.606 3.394 8 O -0.580 6.580 9 N -0.641 5.641 10 C 0.089 3.911 11 C -0.014 4.014 12 C -0.511 4.511 13 H 0.046 0.954 14 C 0.026 3.974 15 N -0.941 5.941 16 Si 0.926 3.074 17 H -0.251 1.251 18 H -0.290 1.290 19 H -0.244 1.244 20 C 0.119 3.881 21 C -0.075 4.075 22 H 0.065 0.935 23 H 0.120 0.880 24 H 0.065 0.935 25 H 0.201 0.799 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.269 0.731 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.892 -14.893 -0.697 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.034 3.966 4 C -0.470 4.470 5 S 0.533 5.467 6 C -0.380 4.380 7 C 0.397 3.603 8 O -0.463 6.463 9 N -0.374 5.374 10 C -0.034 4.034 11 C -0.034 4.034 12 C -0.549 4.549 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.580 5.580 16 Si 0.749 3.251 17 H -0.176 1.176 18 H -0.216 1.216 19 H -0.168 1.168 20 C -0.003 4.003 21 C -0.111 4.111 22 H 0.083 0.917 23 H 0.138 0.862 24 H 0.084 0.916 25 H 0.218 0.782 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.691 -13.965 -0.701 20.281 hybrid contribution -0.239 -1.139 -0.324 1.208 sum -14.931 -15.103 -1.025 21.262 Atomic orbital electron populations 1.23363 0.76067 1.05715 1.02335 1.86093 1.23523 1.24715 1.89605 1.17421 0.90919 0.85661 1.02595 1.25627 1.07357 0.97204 1.16836 1.83343 0.91176 1.05225 1.66964 1.24198 0.97314 0.98426 1.18015 1.16704 0.87074 0.80325 0.76214 1.90763 1.48483 1.52847 1.54173 1.49735 1.13639 1.03277 1.70743 1.23811 0.97437 0.79699 1.02410 1.20755 0.92992 0.92815 0.96840 1.20876 1.23647 0.89464 1.20926 0.93545 1.25787 0.98491 0.94393 0.98604 1.70028 1.43945 0.99558 1.44432 0.86028 0.80500 0.78685 0.79904 1.17558 1.21567 1.16773 1.23089 0.88564 0.87371 1.01254 1.19993 0.93962 0.96277 1.00869 0.91670 0.86157 0.91635 0.78165 0.90633 0.88470 0.91051 0.92234 0.89604 0.91056 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.93 113.37 1.13 1.35 16 2 O -0.32 -7.06 10.56 -96.00 -1.01 -8.08 16 3 C 0.09 2.20 6.61 21.20 0.14 2.34 16 4 C -0.33 -6.83 9.81 66.87 0.66 -6.18 16 5 S 0.27 6.58 19.89 -56.49 -1.12 5.46 16 6 C -0.26 -8.21 6.45 24.09 0.16 -8.06 16 7 C 0.61 23.31 8.03 86.41 0.69 24.00 16 8 O -0.58 -25.71 17.62 -4.38 -0.08 -25.78 16 9 N -0.64 -24.20 3.69 -863.80 -3.19 -27.39 16 10 C 0.09 3.24 6.33 83.09 0.53 3.76 16 11 C -0.01 -0.60 2.99 -11.30 -0.03 -0.64 16 12 C -0.51 -26.01 9.38 25.60 0.24 -25.77 16 13 H 0.05 2.63 8.06 -2.91 -0.02 2.60 16 14 C 0.03 1.39 5.47 84.65 0.46 1.85 16 15 N -0.94 -54.11 13.96 21.45 0.30 -53.81 16 16 Si 0.93 38.77 27.42 68.60 1.88 40.65 16 17 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 18 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.24 -9.49 6.21 99.48 0.62 -8.87 16 20 C 0.12 4.62 8.19 83.17 0.68 5.30 16 21 C -0.07 -2.18 10.00 21.80 0.22 -1.96 16 22 H 0.06 0.63 7.83 -2.39 -0.02 0.61 16 23 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.07 0.63 7.85 -2.39 -0.02 0.61 16 25 H 0.20 2.71 6.96 -2.91 -0.02 2.69 16 26 H 0.08 2.46 6.39 -2.39 -0.02 2.45 16 27 H 0.10 3.46 8.10 -2.38 -0.02 3.44 16 28 H 0.07 2.97 6.50 -2.39 -0.02 2.95 16 29 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 30 H 0.09 3.29 8.10 -2.38 -0.02 3.27 16 31 H 0.07 2.67 8.14 -2.39 -0.02 2.66 16 32 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -64.75 289.18 2.69 -62.06 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.05 Total: 10.88 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.87 Total: -4.00 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.89 Total: -81.19 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.09 Total: -33.86 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.88 Total: 40.65 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.12 Total: 5.46 kcal Total: -64.75 2.69 -62.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473483.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.690 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds