Wall clock time and date at job start Mon Mar 30 2020 04:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86797 * 120.00473 * 2 1 4 4 H 1.48501 * 109.47615 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47198 * 299.99842 * 3 2 1 6 6 H 1.48501 * 109.47252 * 59.99587 * 3 2 1 7 7 C 1.40309 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 144.26365 * 7 2 1 9 9 C 1.40538 * 120.00112 * 324.26368 * 7 2 1 10 10 C 1.44188 * 123.71474 * 47.76602 * 9 7 2 11 11 C 1.32770 * 114.42878 * 179.97438 * 10 9 7 12 12 S 1.75469 * 111.36367 * 0.02562 * 11 10 9 13 13 C 1.39549 * 123.71639 * 227.74805 * 9 7 2 14 14 C 1.46235 * 125.22508 * 359.97438 * 13 9 7 15 15 O 1.21766 * 120.00378 * 21.69309 * 14 13 9 16 16 N 1.34774 * 119.99984 * 201.69614 * 14 13 9 17 17 C 1.47155 * 120.98064 * 6.86537 * 16 14 13 18 18 C 1.53715 * 108.16138 * 129.43240 * 17 16 14 19 19 O 1.42968 * 109.14750 * 52.54071 * 18 17 16 20 20 C 1.42960 * 114.16467 * 297.28756 * 19 18 17 21 21 C 1.47159 * 120.98493 * 187.14758 * 16 14 13 22 22 H 0.97000 * 119.99919 * 0.02562 * 1 2 3 23 23 H 1.08000 * 122.78438 * 359.97438 * 10 9 7 24 24 H 1.07996 * 124.31616 * 180.02562 * 11 10 9 25 25 H 1.08997 * 109.68032 * 249.21429 * 17 16 14 26 26 H 1.08995 * 109.68110 * 9.76605 * 17 16 14 27 27 H 1.08998 * 109.65639 * 292.57284 * 18 17 16 28 28 H 1.09001 * 109.48456 * 172.39760 * 18 17 16 29 29 H 1.09004 * 109.51510 * 302.65677 * 20 19 18 30 30 H 1.08997 * 109.55775 * 182.53023 * 20 19 18 31 31 H 1.09000 * 109.68002 * 350.23651 * 21 16 14 32 32 H 1.08993 * 109.67724 * 110.75184 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.7005 1.3463 0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8817 2.3964 1.2124 7 6 2.0078 -1.2151 0.0005 8 1 2.9353 -1.3035 -0.5457 9 6 1.5036 -2.3173 0.7119 10 6 0.1348 -2.7635 0.6315 11 6 -0.1420 -3.8239 1.3810 12 16 1.2736 -4.3714 2.2615 13 6 2.2725 -3.1007 1.5735 14 6 3.6920 -2.8957 1.8592 15 8 4.2000 -1.8055 1.6696 16 7 4.4380 -3.9136 2.3323 17 6 3.8879 -5.2751 2.4284 18 6 4.8785 -6.2405 1.7579 19 8 6.1791 -6.0409 2.3169 20 6 6.7191 -4.7365 2.0916 21 6 5.8246 -3.6951 2.7739 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6039 -2.2756 0.0129 24 1 -1.1143 -4.2899 1.4411 25 1 3.7592 -5.5459 3.4763 26 1 2.9266 -5.3196 1.9166 27 1 4.9095 -6.0475 0.6855 28 1 4.5603 -7.2680 1.9339 29 1 6.7569 -4.5381 1.0205 30 1 7.7249 -4.6811 2.5078 31 1 6.1464 -2.6929 2.4910 32 1 5.8875 -3.8090 3.8561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864408410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:15 Heat of formation + Delta-G solvation = -63.167192 kcal Electronic energy + Delta-G solvation = -18376.231198 eV Core-core repulsion = 15427.875065 eV Total energy + Delta-G solvation = -2948.356133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00327 -39.14101 -37.71740 -35.55553 -34.93764 -32.60443 -30.80766 -29.20538 -27.62749 -25.16940 -24.17101 -22.86922 -21.19573 -20.42797 -18.89475 -18.08163 -17.28557 -17.03874 -16.77766 -16.45236 -16.22668 -15.90505 -15.49013 -15.39209 -14.40806 -14.16241 -14.10369 -13.82350 -13.63586 -13.43695 -12.99633 -12.67579 -12.58735 -12.33477 -12.23716 -12.06867 -11.82068 -11.28513 -11.09619 -10.79951 -10.52972 -9.57869 -9.23313 -8.93968 -8.72335 -6.39474 0.22520 1.24011 1.27163 1.32596 1.47374 1.57648 1.97935 2.09832 2.18259 2.42101 2.87099 2.98902 3.78815 3.93553 4.09123 4.14479 4.26902 4.36184 4.50738 4.64421 4.67473 4.74981 4.87934 4.93001 5.00929 5.26524 5.37819 5.53812 5.65445 5.91660 6.06842 6.28929 6.54264 6.64013 6.79035 7.54003 8.07907 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.007584 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.911825 B = 3690.962145 C = 4754.780156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.059 3.941 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.247 1.247 6 H -0.263 1.263 7 C -0.449 4.449 8 H 0.057 0.943 9 C 0.121 3.879 10 C -0.139 4.139 11 C -0.210 4.210 12 S 0.063 5.937 13 C -0.448 4.448 14 C 0.596 3.404 15 O -0.590 6.590 16 N -0.632 5.632 17 C 0.058 3.942 18 C 0.056 3.944 19 O -0.387 6.387 20 C 0.057 3.943 21 C 0.077 3.923 22 H 0.296 0.704 23 H 0.134 0.866 24 H 0.177 0.823 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.138 0.862 29 H 0.045 0.955 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -9.049 3.571 10.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.162 4.162 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.171 1.171 6 H -0.188 1.188 7 C -0.481 4.481 8 H 0.076 0.924 9 C 0.109 3.891 10 C -0.171 4.171 11 C -0.343 4.343 12 S 0.322 5.678 13 C -0.566 4.566 14 C 0.392 3.608 15 O -0.473 6.473 16 N -0.368 5.368 17 C -0.066 4.066 18 C -0.021 4.021 19 O -0.306 6.306 20 C -0.021 4.021 21 C -0.046 4.046 22 H 0.108 0.892 23 H 0.152 0.848 24 H 0.194 0.806 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.155 0.845 29 H 0.064 0.936 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.631 -9.673 4.554 11.651 hybrid contribution -0.308 2.306 -1.199 2.617 sum 4.323 -7.367 3.355 9.176 Atomic orbital electron populations 1.69743 1.08642 1.31626 1.31752 1.26681 0.95216 1.03821 0.90504 0.85366 0.79451 0.76606 0.79567 1.20118 1.17119 1.18765 1.18979 1.05791 0.95494 1.27849 0.92438 1.18286 0.90802 0.90556 0.89449 1.21749 0.96999 0.96628 1.01697 1.25874 1.03523 1.02172 1.02713 1.82517 0.99132 1.32966 1.53214 1.23463 0.97995 1.15239 1.19888 1.17207 0.85286 0.82986 0.75295 1.90665 1.73862 1.26654 1.56147 1.48035 1.13653 1.08869 1.66198 1.23059 0.99411 0.81247 1.02915 1.23125 0.81966 1.00594 0.96464 1.87893 1.32497 1.31736 1.78448 1.23007 0.97825 0.81730 0.99501 1.22286 0.81461 1.01030 0.99807 0.89237 0.84836 0.80602 0.90023 0.87571 0.93363 0.84461 0.93614 0.84722 0.90179 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.01 11.70 21.89 0.26 -39.75 16 2 C 0.06 3.06 5.33 85.38 0.46 3.51 16 3 Si 0.97 42.00 29.68 68.60 2.04 44.04 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.45 -25.71 7.57 23.34 0.18 -25.53 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.46 16 9 C 0.12 6.57 5.59 -20.89 -0.12 6.45 16 10 C -0.14 -6.71 9.31 22.61 0.21 -6.50 16 11 C -0.21 -8.39 11.07 66.64 0.74 -7.65 16 12 S 0.06 2.44 18.92 -56.49 -1.07 1.37 16 13 C -0.45 -22.49 6.04 24.67 0.15 -22.34 16 14 C 0.60 29.86 7.54 86.32 0.65 30.51 16 15 O -0.59 -33.83 15.05 -4.56 -0.07 -33.90 16 16 N -0.63 -24.71 3.01 -821.69 -2.48 -27.19 16 17 C 0.06 1.82 5.60 86.50 0.48 2.31 16 18 C 0.06 1.42 7.00 72.22 0.51 1.93 16 19 O -0.39 -10.33 10.74 -148.98 -1.60 -11.93 16 20 C 0.06 1.46 6.98 72.08 0.50 1.97 16 21 C 0.08 2.48 6.65 86.35 0.57 3.05 16 22 H 0.30 13.27 8.29 -92.71 -0.77 12.51 16 23 H 0.13 6.59 6.95 -2.91 -0.02 6.57 16 24 H 0.18 5.57 8.06 -2.91 -0.02 5.54 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.11 3.58 3.78 -21.32 -0.08 3.50 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.08 2.88 7.06 -2.39 -0.02 2.86 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -67.02 279.98 2.48 -64.54 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.07 Total: 15.12 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.33 Total: -12.29 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -2.22 Total: -66.94 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.67 Total: -45.83 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.04 Total: 44.04 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.07 Total: 1.37 kcal Total: -67.02 2.48 -64.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864408410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.377 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds