Wall clock time and date at job start Mon Mar 30 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46738 * 299.99648 * 3 2 1 6 6 H 1.48494 * 109.47440 * 59.99442 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 C 1.53044 * 113.15109 * 275.37353 * 16 15 13 18 18 S 1.81422 * 89.88843 * 211.85079 * 17 16 15 19 19 C 1.53044 * 113.15324 * 174.99879 * 16 15 13 20 20 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 21 21 N 1.30903 * 108.38945 * 359.60960 * 20 11 10 22 22 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 23 23 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 24 24 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 25 25 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 26 26 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 27 27 H 1.09001 * 112.49742 * 45.21245 * 16 15 13 28 28 H 1.08999 * 113.14820 * 327.11218 * 17 16 15 29 29 H 1.08993 * 113.14840 * 96.59175 * 17 16 15 30 30 H 1.08995 * 113.14633 * 263.40778 * 19 16 15 31 31 H 1.09000 * 113.14695 * 32.84436 * 19 16 15 32 32 H 1.07999 * 125.80209 * 179.74829 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 6 -1.3581 -8.8610 -0.0124 17 6 -1.9631 -9.0001 1.3865 18 16 -2.8223 -10.5091 0.8610 19 6 -1.3153 -10.3853 -0.1416 20 6 -0.3513 -3.8198 -0.0064 21 7 -0.0716 -2.5410 -0.0010 22 1 -0.4851 0.8401 -0.0004 23 1 2.9300 -3.8708 0.0032 24 1 1.8707 -6.3427 0.0017 25 1 0.5782 -8.5285 -0.8961 26 1 0.5737 -8.5362 0.8839 27 1 -2.0328 -8.3891 -0.7268 28 1 -1.2167 -9.1794 2.1603 29 1 -2.6426 -8.1872 1.6423 30 1 -1.4522 -10.7326 -1.1656 31 1 -0.4436 -10.8316 0.3370 32 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865057986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:52 Heat of formation + Delta-G solvation = 42.287362 kcal Electronic energy + Delta-G solvation = -17383.048400 eV Core-core repulsion = 14471.557871 eV Total energy + Delta-G solvation = -2911.490529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.65879 -40.33319 -37.65801 -35.81161 -34.89666 -32.24986 -30.65985 -28.92644 -27.17317 -26.64094 -23.04822 -22.49799 -21.18281 -20.95193 -19.28263 -18.05892 -17.40215 -17.28820 -16.78840 -16.64737 -16.03213 -15.62795 -15.15824 -14.81882 -14.66356 -14.23255 -13.85512 -13.78355 -13.45463 -13.24818 -12.94282 -12.82452 -12.75154 -12.24459 -12.02149 -11.78893 -11.64707 -11.06021 -10.98040 -10.78868 -10.51747 -10.07100 -8.84044 -8.46354 -8.45017 -6.21639 0.89462 0.99155 1.25883 1.40946 1.59741 1.60104 1.92989 2.09264 2.39340 2.59751 2.96474 3.11266 3.40954 3.77829 3.86778 4.15917 4.39584 4.46125 4.51955 4.56851 4.66153 4.70441 4.75160 4.89149 5.03491 5.15462 5.24449 5.33679 5.58020 5.99444 6.37272 6.77880 6.88915 7.48572 7.56217 7.73985 8.54640 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.069057 B = 0.003334 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.362225 B = 8396.602144 C = 8685.422024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.172 5.172 10 C -0.082 4.082 11 C -0.042 4.042 12 N -0.619 5.619 13 C 0.493 3.507 14 O -0.582 6.582 15 C -0.107 4.107 16 C -0.072 4.072 17 C -0.064 4.064 18 S -0.380 6.380 19 C -0.047 4.047 20 C -0.062 4.062 21 N -0.314 5.314 22 H 0.275 0.725 23 H 0.188 0.812 24 H 0.422 0.578 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.126 0.874 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -16.902 -0.022 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.059 4.941 10 C -0.232 4.232 11 C -0.149 4.149 12 N -0.264 5.264 13 C 0.281 3.719 14 O -0.461 6.461 15 C -0.149 4.149 16 C -0.093 4.093 17 C -0.212 4.212 18 S -0.154 6.154 19 C -0.194 4.194 20 C -0.238 4.238 21 N -0.146 5.146 22 H 0.085 0.915 23 H 0.205 0.795 24 H 0.259 0.741 25 H 0.156 0.844 26 H 0.152 0.848 27 H 0.112 0.888 28 H 0.144 0.856 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.156 0.844 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.536 -16.108 0.231 16.736 hybrid contribution 1.115 0.566 -0.042 1.251 sum 5.651 -15.542 0.188 16.539 Atomic orbital electron populations 1.70413 1.08445 1.28895 1.37782 1.26872 0.96456 1.04355 0.94245 0.84541 0.79105 0.74477 0.78099 1.16226 1.19893 1.19918 1.20635 0.92927 0.80943 1.53980 0.84162 1.44844 1.03589 1.04896 1.40804 1.22051 0.98920 0.84207 1.18013 1.17378 0.92437 0.84430 1.20611 1.42556 1.10255 1.01933 1.71700 1.21533 0.83326 0.91018 0.75979 1.90611 1.27824 1.76450 1.51264 1.21677 0.97827 0.87088 1.08320 1.22192 0.97232 0.94276 0.95584 1.24519 1.00255 0.94607 1.01828 1.89312 1.34079 1.37845 1.54137 1.24424 0.94905 0.96663 1.03447 1.24176 0.99161 0.90935 1.09486 1.78141 0.92152 1.16852 1.27433 0.91546 0.79457 0.74076 0.84352 0.84838 0.88805 0.85581 0.90688 0.87059 0.84364 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.08 11.81 21.66 0.26 -47.83 16 2 C -0.01 -0.42 5.50 84.95 0.47 0.04 16 3 Si 1.02 38.56 29.55 68.60 2.03 40.59 16 4 H -0.24 -8.04 7.11 99.48 0.71 -7.34 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.35 -18.64 10.25 84.01 0.86 -17.78 16 8 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 9 N -0.17 -9.47 3.74 -190.02 -0.71 -10.18 16 10 C -0.08 -3.66 11.49 83.37 0.96 -2.70 16 11 C -0.04 -1.85 6.90 37.73 0.26 -1.59 16 12 N -0.62 -18.46 5.47 -303.92 -1.66 -20.12 16 13 C 0.49 14.06 7.80 87.66 0.68 14.74 16 14 O -0.58 -23.09 12.93 -3.10 -0.04 -23.13 16 15 C -0.11 -1.49 5.48 29.85 0.16 -1.32 16 16 C -0.07 -1.27 2.80 -10.76 -0.03 -1.30 16 17 C -0.06 -1.30 7.49 72.00 0.54 -0.76 16 18 S -0.38 -8.53 24.79 -56.49 -1.40 -9.93 16 19 C -0.05 -0.59 7.50 72.00 0.54 -0.05 16 20 C -0.06 -3.35 10.85 85.42 0.93 -2.42 16 21 N -0.31 -18.92 10.40 -56.47 -0.59 -19.51 16 22 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 23 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 24 H 0.42 8.22 8.83 -92.71 -0.82 7.40 16 25 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.13 0.98 7.89 -2.39 -0.02 0.96 16 27 H 0.09 2.23 7.71 -2.39 -0.02 2.21 16 28 H 0.13 1.92 7.94 -2.39 -0.02 1.90 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.14 0.91 8.12 -2.39 -0.02 0.90 16 32 H 0.17 9.02 5.92 -2.91 -0.02 9.01 16 Total: -1.00 -80.09 291.08 3.59 -76.50 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.34 Total: 26.77 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.37 Total: -13.15 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -2.70 Total: -97.65 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.04 Total: -23.13 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.40 Total: -9.93 kcal Total: -80.09 3.59 -76.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865057986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.785 kcal (2) G-P(sol) polarization free energy of solvation -80.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds