Wall clock time and date at job start Mon Mar 30 2020 04:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86802 * 120.00174 * 2 1 4 4 H 1.48501 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47042 * 299.99922 * 3 2 1 6 6 H 1.48498 * 109.47072 * 59.99809 * 3 2 1 7 7 C 1.40307 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99890 * 189.79558 * 7 2 1 9 9 C 1.40532 * 120.00443 * 9.79491 * 7 2 1 10 10 C 1.44198 * 123.71347 * 23.63045 * 9 7 2 11 11 C 1.32764 * 114.43188 * 180.26633 * 10 9 7 12 12 S 1.75480 * 111.36054 * 359.75651 * 11 10 9 13 13 C 1.39541 * 123.71922 * 203.43584 * 9 7 2 14 14 C 1.46240 * 125.22774 * 0.02562 * 13 9 7 15 15 O 1.21759 * 120.00024 * 359.71947 * 14 13 9 16 16 N 1.34776 * 119.99942 * 179.71867 * 14 13 9 17 17 C 1.47022 * 125.65006 * 359.97438 * 16 14 13 18 18 C 1.54325 * 107.26977 * 178.99953 * 17 16 14 19 19 C 1.55157 * 102.94110 * 337.80669 * 18 17 16 20 20 H 1.09001 * 110.99981 * 277.38915 * 19 18 17 21 21 O 1.42902 * 111.00168 * 153.58378 * 19 18 17 22 22 C 1.47472 * 125.62776 * 180.02562 * 16 14 13 23 23 H 0.97004 * 119.99709 * 0.02562 * 1 2 3 24 24 H 1.08002 * 122.78052 * 0.02562 * 10 9 7 25 25 H 1.07988 * 124.31946 * 179.75791 * 11 10 9 26 26 H 1.08995 * 109.88066 * 59.57930 * 17 16 14 27 27 H 1.09002 * 110.01035 * 298.48321 * 17 16 14 28 28 H 1.09005 * 110.71543 * 219.44422 * 18 17 16 29 29 H 1.08992 * 110.72200 * 96.17045 * 18 17 16 30 30 H 0.96704 * 113.99377 * 183.17827 * 21 19 18 31 31 H 1.08996 * 110.35481 * 85.22746 * 22 16 14 32 32 H 1.09007 * 110.40119 * 322.89173 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3463 0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0761 -1.2219 0.1597 9 6 1.3206 -2.4234 -0.2060 10 6 0.0553 -2.5175 -0.8911 11 6 -0.4322 -3.7494 -0.9774 12 16 0.6389 -4.9151 -0.2204 13 6 1.7893 -3.6648 0.2260 14 6 3.0425 -3.8895 0.9453 15 8 3.7712 -2.9499 1.2071 16 7 3.3908 -5.1368 1.3187 17 6 2.6081 -6.3561 1.0689 18 6 3.4078 -7.5410 1.6505 19 6 4.8589 -6.9934 1.6930 20 1 5.3423 -7.0921 0.7210 21 8 5.6225 -7.6448 2.7101 22 6 4.6199 -5.5041 2.0462 23 1 -0.4850 0.8401 -0.0004 24 1 -0.4554 -1.6566 -1.2968 25 1 -1.3684 -4.0018 -1.4528 26 1 2.4684 -6.4937 -0.0033 27 1 1.6391 -6.2849 1.5628 28 1 3.3422 -8.4093 0.9947 29 1 3.0588 -7.7866 2.6534 30 1 6.5216 -7.3021 2.8071 31 1 4.4740 -5.3874 3.1201 32 1 5.4581 -4.8948 1.7081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866315400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:14 Heat of formation + Delta-G solvation = -83.523295 kcal Electronic energy + Delta-G solvation = -18026.390990 eV Core-core repulsion = 15077.152151 eV Total energy + Delta-G solvation = -2949.238840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78186 -38.92012 -37.70316 -36.38822 -34.92217 -31.84113 -30.96123 -29.68921 -27.77516 -24.90206 -23.43929 -22.15869 -21.32177 -20.48115 -18.77547 -18.59215 -17.85179 -17.15612 -16.54523 -16.44727 -15.90470 -15.43534 -14.88800 -14.74855 -14.21584 -14.18045 -13.97211 -13.70061 -13.54521 -13.19839 -13.07706 -12.84041 -12.76059 -12.45467 -12.02837 -12.00700 -11.71901 -11.34813 -11.11294 -10.95615 -10.43701 -9.65404 -9.32078 -8.91557 -8.87790 -6.46378 0.29454 1.30947 1.32493 1.41752 1.48164 1.77635 1.94698 2.16055 2.17351 2.46474 3.23412 3.29462 3.52201 3.66478 4.03941 4.22723 4.33776 4.42217 4.57177 4.70501 4.79098 4.84717 4.95980 4.98633 5.14258 5.26114 5.37694 5.52192 5.63856 5.85652 6.35058 6.54312 6.68600 6.79926 6.86799 7.61885 8.05783 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.006333 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.908455 B = 4420.334856 C = 5468.511148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.246 1.246 6 H -0.259 1.259 7 C -0.419 4.419 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.131 4.131 11 C -0.210 4.210 12 S 0.037 5.963 13 C -0.469 4.469 14 C 0.602 3.398 15 O -0.606 6.606 16 N -0.635 5.635 17 C 0.097 3.903 18 C -0.109 4.109 19 C 0.106 3.894 20 H 0.088 0.912 21 O -0.563 6.563 22 C 0.077 3.923 23 H 0.301 0.699 24 H 0.138 0.862 25 H 0.173 0.827 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.399 0.601 31 H 0.060 0.940 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 -9.841 -0.045 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.169 1.169 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.100 0.900 9 C 0.101 3.899 10 C -0.164 4.164 11 C -0.343 4.343 12 S 0.294 5.706 13 C -0.587 4.587 14 C 0.402 3.598 15 O -0.492 6.492 16 N -0.371 5.371 17 C -0.027 4.027 18 C -0.146 4.146 19 C 0.046 3.954 20 H 0.106 0.894 21 O -0.370 6.370 22 C -0.046 4.046 23 H 0.112 0.888 24 H 0.155 0.845 25 H 0.191 0.809 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.250 0.750 31 H 0.078 0.922 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.542 -11.043 0.332 11.337 hybrid contribution 0.634 2.848 -0.139 2.921 sum 3.176 -8.196 0.192 8.792 Atomic orbital electron populations 1.69665 1.08814 1.31888 1.31404 1.27070 0.95812 1.04893 0.90720 0.85038 0.78833 0.75232 0.79951 1.19492 1.16925 1.18292 1.20048 0.96830 0.90846 1.37218 0.89989 1.18386 0.90996 0.92346 0.88162 1.21559 0.96387 0.97232 1.01183 1.25774 1.04587 0.97299 1.06652 1.82505 1.14640 1.10456 1.62997 1.22993 1.06256 0.97584 1.31886 1.16803 0.84660 0.80665 0.77710 1.90614 1.55329 1.42452 1.60830 1.48063 1.23361 1.06231 1.59434 1.22101 0.95460 0.83600 1.01499 1.22608 0.91913 0.96766 1.03361 1.22808 0.93058 0.88069 0.91452 0.89403 1.86455 1.30786 1.62130 1.57633 1.22895 0.87610 0.97664 0.96466 0.88760 0.84498 0.80942 0.90650 0.91332 0.86643 0.89406 0.75046 0.92172 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.21 10.82 21.89 0.24 -38.97 16 2 C 0.04 1.77 5.39 85.37 0.46 2.23 16 3 Si 0.99 39.02 29.57 68.60 2.03 41.05 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.42 -24.09 8.52 23.33 0.20 -23.89 16 8 H 0.08 5.07 6.04 -2.91 -0.02 5.06 16 9 C 0.11 6.31 5.67 -20.89 -0.12 6.19 16 10 C -0.13 -6.53 9.04 22.61 0.20 -6.33 16 11 C -0.21 -8.87 11.07 66.64 0.74 -8.13 16 12 S 0.04 1.54 18.50 -56.49 -1.04 0.50 16 13 C -0.47 -24.70 6.44 24.67 0.16 -24.55 16 14 C 0.60 31.60 7.80 86.32 0.67 32.27 16 15 O -0.61 -36.06 14.70 -4.54 -0.07 -36.12 16 16 N -0.64 -25.84 3.33 -816.80 -2.72 -28.55 16 17 C 0.10 3.09 5.16 86.73 0.45 3.53 16 18 C -0.11 -2.50 6.69 31.78 0.21 -2.28 16 19 C 0.11 2.49 4.43 31.99 0.14 2.63 16 20 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 21 O -0.56 -11.43 13.47 -148.98 -2.01 -13.43 16 22 C 0.08 2.52 6.64 86.85 0.58 3.10 16 23 H 0.30 13.00 8.29 -92.71 -0.77 12.23 16 24 H 0.14 6.82 6.41 -2.91 -0.02 6.80 16 25 H 0.17 5.85 8.06 -2.92 -0.02 5.83 16 26 H 0.08 2.38 6.81 -2.39 -0.02 2.37 16 27 H 0.07 2.27 6.96 -2.39 -0.02 2.26 16 28 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.40 4.76 9.12 -74.05 -0.68 4.08 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.18 8.04 -2.38 -0.02 2.16 16 Total: -1.00 -70.38 280.86 0.61 -69.77 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.49 Total: 20.99 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.69 Total: -15.23 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -2.48 Total: -67.53 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.07 Total: -49.56 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.04 Total: 0.50 kcal Total: -70.38 0.61 -69.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866315400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.755 kcal (2) G-P(sol) polarization free energy of solvation -70.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds