Wall clock time and date at job start Mon Mar 30 2020 05:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46681 * 2 1 4 4 N 1.29862 * 125.54807 * 90.00546 * 3 2 1 5 5 N 1.26256 * 117.78580 * 179.70231 * 4 3 2 6 6 C 1.30755 * 116.24908 * 0.54004 * 5 4 3 7 7 C 1.47313 * 126.18529 * 179.77082 * 6 5 4 8 8 O 1.21616 * 119.99770 * 179.68758 * 7 6 5 9 9 N 1.34770 * 120.00268 * 359.68830 * 7 6 5 10 10 C 1.47586 * 134.49328 * 179.97438 * 9 7 6 11 11 C 1.53950 * 86.11354 * 155.35990 * 10 9 7 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.47813 * 134.45830 * 359.86804 * 9 7 6 21 21 S 1.71280 * 125.54482 * 269.99169 * 3 2 1 22 22 H 1.09005 * 109.47271 * 299.99988 * 1 2 3 23 23 H 1.09001 * 109.47191 * 59.99765 * 1 2 3 24 24 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47029 * 239.99752 * 2 1 3 26 26 H 1.09002 * 109.46857 * 119.99338 * 2 1 3 27 27 H 1.09008 * 113.76654 * 41.06222 * 10 9 7 28 28 H 1.08991 * 113.77014 * 269.66271 * 10 9 7 29 29 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 30 30 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 31 31 H 1.09002 * 113.76703 * 90.37825 * 20 9 7 32 32 H 1.08998 * 113.83277 * 318.91803 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2839 2.1327 1.0566 5 7 2.7063 3.3102 0.8861 6 6 2.8391 3.7030 -0.3540 7 6 3.3069 5.0262 -0.8018 8 8 3.3933 5.2705 -1.9900 9 7 3.6391 5.9660 0.1053 10 6 4.1307 7.3551 0.0227 11 6 3.5179 7.5443 1.4222 12 6 4.3894 8.3342 2.3644 13 1 5.3343 8.7298 2.0225 14 6 3.9830 8.5466 3.6647 15 7 2.8351 8.0597 4.0829 16 14 5.0630 9.5262 4.8324 17 1 6.2931 9.9600 4.1228 18 1 4.3198 10.7197 5.3104 19 1 5.4348 8.6771 5.9927 20 6 3.6553 6.0193 1.5823 21 16 2.3643 2.3596 -1.3936 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.6455 7.9475 -0.7531 28 1 5.2175 7.4362 0.0044 29 1 2.4852 7.8928 1.4057 30 1 2.5495 8.2089 4.9977 31 1 4.6024 5.7074 2.0228 32 1 2.7913 5.5469 2.0496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912399806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:59 Heat of formation + Delta-G solvation = 57.627508 kcal Electronic energy + Delta-G solvation = -17441.874011 eV Core-core repulsion = 14531.048681 eV Total energy + Delta-G solvation = -2910.825330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.14239 -39.34726 -37.09043 -34.75583 -32.69725 -31.01043 -28.99388 -27.06598 -25.17037 -25.08864 -23.74956 -21.89125 -19.96858 -19.11927 -18.27231 -16.92719 -16.46448 -15.88686 -15.57567 -14.95694 -14.69237 -14.38558 -14.24108 -13.47731 -13.35943 -12.82846 -12.61056 -12.20323 -12.08871 -11.60377 -11.58640 -11.30775 -10.99381 -10.87077 -10.70636 -10.45743 -10.21879 -9.86072 -9.79740 -9.75285 -9.34751 -9.06206 -8.58917 -8.00664 -6.16194 -4.22552 0.04838 0.70918 1.25553 2.26172 3.24776 3.28956 3.33666 3.35471 3.38939 3.89677 4.34481 4.42555 4.58911 4.82772 4.98985 5.07360 5.16284 5.40113 5.45662 5.62059 5.84961 6.01723 6.07655 6.20896 6.30323 6.60504 6.65448 6.90608 7.53776 7.80604 8.13582 8.18583 8.36618 8.54456 8.80572 9.44380 10.93485 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.004593 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.195527 B = 6095.141085 C = 6828.347181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C -0.011 4.011 4 N -0.266 5.266 5 N -0.201 5.201 6 C -0.029 4.029 7 C 0.601 3.399 8 O -0.552 6.552 9 N -0.609 5.609 10 C 0.107 3.893 11 C 0.031 3.969 12 C -0.521 4.521 13 H 0.065 0.935 14 C 0.069 3.931 15 N -0.883 5.883 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.113 3.887 21 S 0.197 5.803 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.264 0.736 31 H 0.079 0.921 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -14.371 -8.125 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.084 4.084 3 C -0.288 4.288 4 N -0.106 5.106 5 N -0.044 5.044 6 C -0.309 4.309 7 C 0.384 3.616 8 O -0.432 6.432 9 N -0.341 5.341 10 C -0.014 4.014 11 C 0.012 3.988 12 C -0.559 4.559 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.519 5.519 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.009 4.009 21 S 0.441 5.559 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.995 -14.332 -8.412 16.886 hybrid contribution 0.531 0.351 0.858 1.068 sum -2.464 -13.981 -7.554 16.081 Atomic orbital electron populations 1.21806 0.92966 1.02922 1.03101 1.20201 0.97048 0.86264 1.04859 1.29550 1.02735 1.04067 0.92474 1.71369 1.12989 0.99299 1.26962 1.72180 1.10000 1.05652 1.16534 1.29946 1.06972 1.01798 0.92160 1.16246 0.79541 0.80546 0.85234 1.90801 1.57497 1.79457 1.15408 1.50483 1.59985 1.13636 1.09955 1.23699 0.99423 0.77509 1.00746 1.20568 0.98065 0.91066 0.89090 1.20958 1.05073 1.34523 0.95365 0.91690 1.25024 0.94971 0.95205 0.98313 1.69963 1.20246 1.44332 1.17403 0.86479 0.80600 0.79800 0.80814 1.19571 1.20881 1.20883 1.23944 1.01568 1.00324 0.75024 1.84672 1.56872 1.04320 1.10049 0.91574 0.92202 0.90948 0.89141 0.88096 0.91418 0.90001 0.91628 0.92618 0.90278 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.04 -0.34 6.53 -27.88 -0.18 -0.53 16 3 C -0.01 -0.14 6.79 -13.11 -0.09 -0.23 16 4 N -0.27 -4.48 11.59 32.66 0.38 -4.10 16 5 N -0.20 -3.86 10.09 32.94 0.33 -3.53 16 6 C -0.03 -0.54 7.54 -14.32 -0.11 -0.64 16 7 C 0.60 12.44 8.04 -12.57 -0.10 12.34 16 8 O -0.55 -12.14 17.70 5.26 0.09 -12.05 16 9 N -0.61 -12.95 3.61 -179.52 -0.65 -13.60 16 10 C 0.11 2.22 8.39 -2.96 -0.02 2.19 16 11 C 0.03 0.74 3.60 -90.84 -0.33 0.42 16 12 C -0.52 -13.29 8.77 -34.44 -0.30 -13.60 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.88 -24.38 13.29 55.43 0.74 -23.64 16 16 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.11 2.54 7.45 -2.83 -0.02 2.51 16 21 S 0.20 2.64 23.13 -107.50 -2.49 0.16 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 28 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 29 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 31 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 32 H 0.08 1.83 7.51 -51.93 -0.39 1.44 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -29.98 299.55 -6.72 -36.70 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.73 Total: -3.12 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.89 Total: 3.45 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.80 Total: -44.86 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.49 Total: 0.16 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.98 -6.72 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912399806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.331 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds