Wall clock time and date at job start Mon Mar 30 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46681 * 2 1 4 4 N 1.29862 * 125.54807 * 90.00546 * 3 2 1 5 5 N 1.26256 * 117.78580 * 179.70231 * 4 3 2 6 6 C 1.30755 * 116.24908 * 0.54004 * 5 4 3 7 7 C 1.47313 * 126.18529 * 179.77082 * 6 5 4 8 8 O 1.21616 * 119.99770 * 179.68758 * 7 6 5 9 9 N 1.34770 * 120.00268 * 359.68830 * 7 6 5 10 10 C 1.47586 * 134.49328 * 179.97438 * 9 7 6 11 11 C 1.53950 * 86.11354 * 155.35990 * 10 9 7 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.47813 * 134.45830 * 359.86804 * 9 7 6 21 21 S 1.71280 * 125.54482 * 269.99169 * 3 2 1 22 22 H 1.09005 * 109.47271 * 299.99988 * 1 2 3 23 23 H 1.09001 * 109.47191 * 59.99765 * 1 2 3 24 24 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47029 * 239.99752 * 2 1 3 26 26 H 1.09002 * 109.46857 * 119.99338 * 2 1 3 27 27 H 1.09008 * 113.76654 * 41.06222 * 10 9 7 28 28 H 1.08991 * 113.77014 * 269.66271 * 10 9 7 29 29 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 30 30 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 31 31 H 1.09002 * 113.76703 * 90.37825 * 20 9 7 32 32 H 1.08998 * 113.83277 * 318.91803 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2839 2.1327 1.0566 5 7 2.7063 3.3102 0.8861 6 6 2.8391 3.7030 -0.3540 7 6 3.3069 5.0262 -0.8018 8 8 3.3933 5.2705 -1.9900 9 7 3.6391 5.9660 0.1053 10 6 4.1307 7.3551 0.0227 11 6 3.5179 7.5443 1.4222 12 6 4.3894 8.3342 2.3644 13 1 5.3343 8.7298 2.0225 14 6 3.9830 8.5466 3.6647 15 7 2.8351 8.0597 4.0829 16 14 5.0630 9.5262 4.8324 17 1 6.2931 9.9600 4.1228 18 1 4.3198 10.7197 5.3104 19 1 5.4348 8.6771 5.9927 20 6 3.6553 6.0193 1.5823 21 16 2.3643 2.3596 -1.3936 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.6455 7.9475 -0.7531 28 1 5.2175 7.4362 0.0044 29 1 2.4852 7.8928 1.4057 30 1 2.5495 8.2089 4.9977 31 1 4.6024 5.7074 2.0228 32 1 2.7913 5.5469 2.0496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912399806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:58 Heat of formation + Delta-G solvation = 37.835324 kcal Electronic energy + Delta-G solvation = -17442.732265 eV Core-core repulsion = 14531.048681 eV Total energy + Delta-G solvation = -2911.683584 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.41455 -41.01159 -38.80719 -35.60742 -34.65531 -32.31824 -30.58342 -28.32347 -26.94042 -26.85380 -24.73232 -23.21915 -21.60645 -20.33357 -19.78800 -18.74900 -18.01755 -17.30249 -17.14508 -16.56769 -16.07840 -15.80781 -15.09494 -14.99778 -14.63525 -14.27634 -14.03005 -13.61114 -13.35023 -13.18752 -12.84351 -12.74247 -12.67221 -12.26560 -12.24840 -11.97933 -11.58394 -11.31808 -11.16911 -11.02607 -10.92595 -10.87251 -10.57314 -9.73143 -8.16249 -6.28339 -1.17233 -0.46451 0.09074 0.95289 1.46664 1.49516 1.60482 1.76373 1.84180 2.45956 2.68254 3.14205 3.22677 3.61988 3.89460 4.20921 4.24252 4.27152 4.32339 4.49130 4.61367 4.70158 4.78658 4.89960 4.94870 5.01819 5.04888 5.29359 5.57099 5.80635 6.19241 6.50696 6.75659 6.80739 7.26295 7.42039 8.94018 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.004593 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.195527 B = 6095.141085 C = 6828.347181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.008 3.992 4 N -0.302 5.302 5 N -0.225 5.225 6 C -0.080 4.080 7 C 0.603 3.397 8 O -0.569 6.569 9 N -0.616 5.616 10 C 0.117 3.883 11 C 0.021 3.979 12 C -0.529 4.529 13 H 0.072 0.928 14 C 0.019 3.981 15 N -0.920 5.920 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.130 3.870 21 S 0.271 5.729 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.076 0.924 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 -16.107 -9.144 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.268 4.268 4 N -0.142 5.142 5 N -0.069 5.069 6 C -0.359 4.359 7 C 0.388 3.612 8 O -0.450 6.450 9 N -0.347 5.347 10 C -0.004 4.004 11 C 0.002 3.998 12 C -0.567 4.567 13 H 0.090 0.910 14 C -0.181 4.181 15 N -0.558 5.558 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.208 1.208 19 H -0.209 1.209 20 C 0.008 3.992 21 S 0.516 5.484 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.144 0.856 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.622 -16.070 -9.462 18.832 hybrid contribution 0.326 0.714 1.075 1.331 sum -2.296 -15.355 -8.386 17.646 Atomic orbital electron populations 1.21835 0.91971 1.04604 1.02262 1.20610 0.97638 0.83313 1.07132 1.30457 0.99372 1.05335 0.91654 1.71362 1.15158 0.99161 1.28564 1.72156 1.10149 1.06971 1.17634 1.29574 1.10035 1.02535 0.93732 1.16456 0.78678 0.81238 0.84785 1.90771 1.58203 1.80173 1.15808 1.50388 1.60733 1.14230 1.09387 1.23600 1.00151 0.77599 0.99045 1.20471 0.96631 0.91593 0.91123 1.21296 1.05360 1.34287 0.95778 0.91008 1.25803 0.96084 0.96224 0.99986 1.70087 1.21997 1.45930 1.17749 0.85465 0.79153 0.78188 0.78608 1.18460 1.20812 1.20922 1.23553 1.00544 0.99138 0.75947 1.84332 1.54849 1.01105 1.08142 0.93543 0.91961 0.88049 0.85592 0.87039 0.90296 0.88529 0.94424 0.92703 0.90560 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.05 -0.58 6.53 29.85 0.20 -0.39 16 3 C 0.01 0.18 6.79 88.40 0.60 0.78 16 4 N -0.30 -10.03 11.59 -50.60 -0.59 -10.62 16 5 N -0.23 -8.76 10.09 -49.70 -0.50 -9.26 16 6 C -0.08 -2.93 7.54 87.24 0.66 -2.28 16 7 C 0.60 25.15 8.04 86.63 0.70 25.84 16 8 O -0.57 -24.82 17.70 -4.08 -0.07 -24.90 16 9 N -0.62 -26.63 3.61 -840.14 -3.03 -29.67 16 10 C 0.12 4.84 8.39 86.49 0.73 5.57 16 11 C 0.02 1.03 3.60 -10.87 -0.04 0.99 16 12 C -0.53 -27.23 8.77 25.60 0.22 -27.01 16 13 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 14 C 0.02 1.02 5.46 84.66 0.46 1.48 16 15 N -0.92 -52.03 13.29 21.45 0.28 -51.75 16 16 Si 0.96 41.63 29.54 68.60 2.03 43.66 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.13 6.06 7.45 86.44 0.64 6.70 16 21 S 0.27 6.72 23.13 -56.49 -1.31 5.41 16 22 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 28 H 0.10 3.69 8.09 -2.39 -0.02 3.67 16 29 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.08 3.54 8.09 -2.39 -0.02 3.52 16 32 H 0.06 2.96 7.51 -2.39 -0.02 2.95 16 Total: -1.00 -66.01 299.55 2.82 -63.19 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.13 Total: 3.20 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 4.88 Total: 10.73 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -3.84 Total: -101.29 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.31 Total: 5.41 kcal Total: -66.01 2.82 -63.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912399806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.025 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds