Wall clock time and date at job start Mon Mar 30 2020 05:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47206 * 270.00151 * 3 2 1 5 5 H 1.48504 * 109.46902 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.47267 * 149.99943 * 3 2 1 7 7 C 1.37871 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00170 * 179.72648 * 7 2 1 9 9 C 1.50697 * 120.00366 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47012 * 300.00181 * 9 7 2 11 11 O 1.42902 * 109.47060 * 60.00260 * 9 7 2 12 12 C 1.52997 * 109.47300 * 180.02562 * 9 7 2 13 13 N 1.46909 * 109.47016 * 174.91754 * 12 9 7 14 14 C 1.47907 * 110.99897 * 284.09809 * 13 12 9 15 15 C 1.54598 * 102.62844 * 265.48880 * 14 13 12 16 16 C 1.51575 * 102.83651 * 334.46655 * 15 14 13 17 17 C 1.38983 * 107.95352 * 15.93380 * 16 15 14 18 18 C 1.39372 * 119.10040 * 180.77335 * 17 16 15 19 19 C 1.37959 * 120.22263 * 359.71812 * 18 17 16 20 20 C 1.38238 * 120.27583 * 359.97438 * 19 18 17 21 21 C 1.37980 * 131.57135 * 196.32001 * 16 15 14 22 22 Cl 1.73606 * 119.97415 * 359.29144 * 21 16 15 23 23 H 0.97005 * 120.00420 * 0.02562 * 1 2 3 24 24 H 0.96692 * 114.00209 * 59.99965 * 11 9 7 25 25 H 1.09000 * 109.47172 * 294.91465 * 12 9 7 26 26 H 1.09002 * 109.47329 * 54.92064 * 12 9 7 27 27 H 1.09005 * 110.77588 * 23.77607 * 14 13 12 28 28 H 1.09003 * 110.77486 * 147.20671 * 14 13 12 29 29 H 1.08998 * 110.74022 * 216.12418 * 15 14 13 30 30 H 1.09003 * 110.89017 * 92.87557 * 15 14 13 31 31 H 1.07996 * 119.88841 * 179.69704 * 18 17 16 32 32 H 1.07997 * 119.85920 * 179.97438 * 19 18 17 33 33 H 1.08004 * 120.06294 * 180.16692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0050 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1671 12 6 2.2453 -3.6620 -0.0005 13 7 1.5150 -4.9307 0.1222 14 6 1.0507 -5.1429 1.5104 15 6 2.1821 -6.0041 2.1173 16 6 2.7717 -6.6909 0.9014 17 6 2.3292 -6.0146 -0.2292 18 6 2.7238 -6.4666 -1.4872 19 6 3.5473 -7.5674 -1.6027 20 6 3.9877 -8.2300 -0.4722 21 6 3.5977 -7.7895 0.7812 22 17 4.1486 -8.6202 2.2026 23 1 -0.4851 0.8401 -0.0004 24 1 0.9209 -2.5291 -1.9983 25 1 2.8105 -3.6568 -0.9326 26 1 2.9304 -3.5544 0.8405 27 1 0.9621 -4.1931 2.0379 28 1 0.1041 -5.6834 1.5231 29 1 1.7774 -6.7363 2.8160 30 1 2.9280 -5.3773 2.6062 31 1 2.3835 -5.9536 -2.3745 32 1 3.8491 -7.9129 -2.5804 33 1 4.6344 -9.0899 -0.5666 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930029028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:25 Heat of formation + Delta-G solvation = -19.885535 kcal Electronic energy + Delta-G solvation = -17938.549284 eV Core-core repulsion = 14990.026278 eV Total energy + Delta-G solvation = -2948.523006 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.63172 -37.28029 -36.23782 -35.26323 -32.16834 -31.91836 -29.93499 -28.77038 -27.62725 -24.71574 -23.00885 -21.57635 -21.31348 -19.93927 -17.30309 -16.31782 -16.12528 -15.47380 -15.27219 -14.63530 -14.48745 -13.96549 -13.68669 -13.57912 -13.06164 -12.84597 -12.55975 -12.22964 -11.86563 -11.49279 -11.33628 -11.18694 -10.99674 -10.97004 -10.88080 -10.78223 -10.69270 -10.11035 -9.50923 -8.93292 -8.63401 -8.62186 -8.09529 -7.59788 -6.04992 -4.24433 1.22605 1.29981 2.14191 3.24970 3.32315 3.34497 3.61427 3.96629 4.36345 4.64179 4.86213 5.03648 5.22197 5.26633 5.29959 5.38722 5.48700 5.70018 5.90571 5.92306 5.96379 6.09595 6.18494 6.24038 6.37595 6.42613 6.48391 6.65795 6.71241 7.25594 7.51134 7.69747 7.81225 8.12474 8.79188 9.40271 9.56149 10.99024 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.004612 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.059189 B = 6069.621473 C = 6274.835601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.082 3.918 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.577 4.577 8 H 0.055 0.945 9 C 0.239 3.761 10 H 0.057 0.943 11 O -0.554 6.554 12 C 0.035 3.965 13 N -0.481 5.481 14 C 0.051 3.949 15 C -0.106 4.106 16 C -0.141 4.141 17 C 0.124 3.876 18 C -0.115 4.115 19 C -0.092 4.092 20 C -0.139 4.139 21 C -0.001 4.001 22 Cl -0.082 7.082 23 H 0.261 0.739 24 H 0.342 0.658 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -14.971 0.843 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.616 4.616 8 H 0.073 0.927 9 C 0.181 3.819 10 H 0.075 0.925 11 O -0.356 6.356 12 C -0.090 4.090 13 N -0.196 5.196 14 C -0.076 4.076 15 C -0.144 4.144 16 C -0.145 4.145 17 C 0.026 3.974 18 C -0.136 4.136 19 C -0.110 4.110 20 C -0.159 4.159 21 C -0.028 4.028 22 Cl -0.054 7.054 23 H 0.071 0.929 24 H 0.185 0.815 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.632 -14.853 1.114 15.924 hybrid contribution 1.685 0.817 0.265 1.891 sum 7.317 -14.036 1.379 15.888 Atomic orbital electron populations 1.70079 1.05927 1.26531 1.46678 1.25005 0.94675 0.99089 0.93719 0.86668 0.79948 0.83460 0.78279 1.20461 1.21054 1.19847 1.21609 0.93156 0.91450 1.55335 0.92670 1.19351 0.87710 0.88197 0.86671 0.92547 1.86582 1.37805 1.96249 1.14976 1.23315 0.97072 0.88016 1.00574 1.60224 1.34925 1.01353 1.23139 1.23198 0.97207 1.00484 0.86719 1.21716 0.98545 0.98746 0.95440 1.20915 0.99131 0.97257 0.97187 1.19807 0.91541 0.93210 0.92857 1.20650 0.99448 0.97370 0.96082 1.20831 0.97051 0.94991 0.98161 1.20851 1.02926 1.01800 0.90307 1.20219 0.99907 0.94928 0.87794 1.98344 1.88765 1.77964 1.40288 0.92896 0.81465 0.91538 0.94111 0.88732 0.89608 0.89681 0.89826 0.85100 0.84920 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 12.84 55.43 0.71 -24.21 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.58 -15.44 8.76 -34.44 -0.30 -15.74 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.24 5.88 2.89 -27.89 -0.08 5.80 16 10 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 11 O -0.55 -14.18 12.68 -35.23 -0.45 -14.63 16 12 C 0.03 0.70 4.32 -3.82 -0.02 0.68 16 13 N -0.48 -8.78 4.95 -169.01 -0.84 -9.62 16 14 C 0.05 0.82 6.67 -2.43 -0.02 0.81 16 15 C -0.11 -1.51 6.70 -26.61 -0.18 -1.69 16 16 C -0.14 -2.13 6.11 -104.01 -0.64 -2.77 16 17 C 0.12 2.02 5.49 -83.41 -0.46 1.56 16 18 C -0.12 -1.64 10.05 -39.26 -0.39 -2.03 16 19 C -0.09 -1.07 10.02 -39.68 -0.40 -1.47 16 20 C -0.14 -1.67 9.84 -39.50 -0.39 -2.06 16 21 C 0.00 -0.02 6.31 -39.59 -0.25 -0.27 16 22 Cl -0.08 -1.01 28.78 -51.86 -1.49 -2.50 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.34 7.80 9.04 45.56 0.41 8.22 16 25 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 26 H 0.04 0.82 7.94 -51.93 -0.41 0.41 16 27 H 0.09 1.60 6.68 -51.93 -0.35 1.25 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -29.90 295.84 -9.04 -38.94 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.20 Total: 6.83 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.21 Total: -15.02 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.12 Total: -33.83 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.45 Total: -14.63 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.49 Total: -2.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.90 -9.04 -38.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930029028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.050 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds