Wall clock time and date at job start Mon Mar 30 2020 05:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47206 * 270.00151 * 3 2 1 5 5 H 1.48504 * 109.46902 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.47267 * 149.99943 * 3 2 1 7 7 C 1.37871 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00170 * 179.72648 * 7 2 1 9 9 C 1.50697 * 120.00366 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47012 * 300.00181 * 9 7 2 11 11 O 1.42902 * 109.47060 * 60.00260 * 9 7 2 12 12 C 1.52997 * 109.47300 * 180.02562 * 9 7 2 13 13 N 1.46909 * 109.47016 * 174.91754 * 12 9 7 14 14 C 1.47907 * 110.99897 * 284.09809 * 13 12 9 15 15 C 1.54598 * 102.62844 * 265.48880 * 14 13 12 16 16 C 1.51575 * 102.83651 * 334.46655 * 15 14 13 17 17 C 1.38983 * 107.95352 * 15.93380 * 16 15 14 18 18 C 1.39372 * 119.10040 * 180.77335 * 17 16 15 19 19 C 1.37959 * 120.22263 * 359.71812 * 18 17 16 20 20 C 1.38238 * 120.27583 * 359.97438 * 19 18 17 21 21 C 1.37980 * 131.57135 * 196.32001 * 16 15 14 22 22 Cl 1.73606 * 119.97415 * 359.29144 * 21 16 15 23 23 H 0.97005 * 120.00420 * 0.02562 * 1 2 3 24 24 H 0.96692 * 114.00209 * 59.99965 * 11 9 7 25 25 H 1.09000 * 109.47172 * 294.91465 * 12 9 7 26 26 H 1.09002 * 109.47329 * 54.92064 * 12 9 7 27 27 H 1.09005 * 110.77588 * 23.77607 * 14 13 12 28 28 H 1.09003 * 110.77486 * 147.20671 * 14 13 12 29 29 H 1.08998 * 110.74022 * 216.12418 * 15 14 13 30 30 H 1.09003 * 110.89017 * 92.87557 * 15 14 13 31 31 H 1.07996 * 119.88841 * 179.69704 * 18 17 16 32 32 H 1.07997 * 119.85920 * 179.97438 * 19 18 17 33 33 H 1.08004 * 120.06294 * 180.16692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0050 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1671 12 6 2.2453 -3.6620 -0.0005 13 7 1.5150 -4.9307 0.1222 14 6 1.0507 -5.1429 1.5104 15 6 2.1821 -6.0041 2.1173 16 6 2.7717 -6.6909 0.9014 17 6 2.3292 -6.0146 -0.2292 18 6 2.7238 -6.4666 -1.4872 19 6 3.5473 -7.5674 -1.6027 20 6 3.9877 -8.2300 -0.4722 21 6 3.5977 -7.7895 0.7812 22 17 4.1486 -8.6202 2.2026 23 1 -0.4851 0.8401 -0.0004 24 1 0.9209 -2.5291 -1.9983 25 1 2.8105 -3.6568 -0.9326 26 1 2.9304 -3.5544 0.8405 27 1 0.9621 -4.1931 2.0379 28 1 0.1041 -5.6834 1.5231 29 1 1.7774 -6.7363 2.8160 30 1 2.9280 -5.3773 2.6062 31 1 2.3835 -5.9536 -2.3745 32 1 3.8491 -7.9129 -2.5804 33 1 4.6344 -9.0899 -0.5666 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930029028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:25 Heat of formation + Delta-G solvation = -39.587781 kcal Electronic energy + Delta-G solvation = -17939.403637 eV Core-core repulsion = 14990.026278 eV Total energy + Delta-G solvation = -2949.377359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.81932 -38.54996 -37.45277 -36.84374 -34.24594 -33.20719 -31.26882 -29.93602 -29.24551 -26.51253 -24.21330 -23.10365 -22.38041 -21.45361 -19.16875 -17.64532 -17.31215 -16.76736 -16.61770 -16.46733 -16.11700 -15.34308 -15.25549 -14.86686 -14.47714 -14.26667 -13.86478 -13.46282 -13.22898 -12.95435 -12.84754 -12.75405 -12.56436 -12.49577 -12.22110 -12.09447 -11.97227 -11.87210 -11.15140 -10.72108 -10.57778 -9.95399 -9.65806 -8.86844 -8.14094 -6.40778 0.17716 0.24056 1.13519 1.41138 1.41624 1.52307 2.36749 2.55496 2.76996 3.12407 3.53103 3.72512 3.98716 4.07562 4.14470 4.29342 4.36958 4.42367 4.49984 4.55927 4.61043 4.72919 4.87037 4.93955 5.02410 5.19743 5.33776 5.38953 5.57416 5.63945 5.75657 5.88240 6.09923 6.30321 6.71707 7.33900 7.59231 8.90348 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.004612 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.059189 B = 6069.621473 C = 6274.835601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.030 3.970 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.241 3.759 10 H 0.025 0.975 11 O -0.571 6.571 12 C 0.057 3.943 13 N -0.497 5.497 14 C 0.047 3.953 15 C -0.097 4.097 16 C -0.151 4.151 17 C 0.090 3.910 18 C -0.123 4.123 19 C -0.081 4.081 20 C -0.129 4.129 21 C -0.012 4.012 22 Cl -0.071 7.071 23 H 0.262 0.738 24 H 0.353 0.647 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -16.307 0.261 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.173 4.173 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.628 4.628 8 H 0.077 0.923 9 C 0.183 3.817 10 H 0.042 0.958 11 O -0.374 6.374 12 C -0.068 4.068 13 N -0.213 5.213 14 C -0.079 4.079 15 C -0.135 4.135 16 C -0.155 4.155 17 C -0.007 4.007 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.039 4.039 22 Cl -0.043 7.043 23 H 0.071 0.929 24 H 0.197 0.803 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.188 0.812 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.539 -16.216 0.532 17.891 hybrid contribution 1.120 1.103 0.429 1.629 sum 8.659 -15.113 0.960 17.444 Atomic orbital electron populations 1.70217 1.07660 1.27434 1.48157 1.25855 0.95424 1.02798 0.93255 0.85571 0.78703 0.78870 0.78505 1.19740 1.20864 1.18979 1.21995 0.93490 0.92643 1.54642 0.92321 1.19181 0.87675 0.89614 0.85257 0.95758 1.86522 1.38758 1.96408 1.15760 1.22813 0.95553 0.88028 1.00399 1.60134 1.35646 1.01190 1.24310 1.23192 0.98373 1.00178 0.86189 1.21625 0.97658 0.98646 0.95593 1.20976 0.99777 0.97923 0.96794 1.19935 0.93219 0.93309 0.94255 1.20914 0.99787 0.98249 0.95396 1.21232 0.95360 0.93486 0.99881 1.21283 1.02011 1.01998 0.89524 1.20406 0.99797 0.94736 0.88989 1.98348 1.88528 1.77541 1.39846 0.92915 0.80304 0.91298 0.94605 0.90421 0.89058 0.87956 0.90014 0.84907 0.81238 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.38 12.84 21.44 0.28 -53.10 16 2 C 0.03 1.63 5.40 84.65 0.46 2.09 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.59 -32.00 8.76 25.60 0.22 -31.77 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.24 12.24 2.89 29.85 0.09 12.32 16 10 H 0.02 1.39 6.91 -2.38 -0.02 1.37 16 11 O -0.57 -30.06 12.68 -148.98 -1.89 -31.95 16 12 C 0.06 2.37 4.32 86.30 0.37 2.74 16 13 N -0.50 -18.46 4.95 -688.63 -3.41 -21.86 16 14 C 0.05 1.58 6.67 86.65 0.58 2.16 16 15 C -0.10 -2.73 6.70 30.67 0.21 -2.52 16 16 C -0.15 -4.39 6.11 -19.47 -0.12 -4.51 16 17 C 0.09 2.88 5.49 38.28 0.21 3.09 16 18 C -0.12 -3.30 10.05 22.48 0.23 -3.07 16 19 C -0.08 -1.62 10.02 22.20 0.22 -1.40 16 20 C -0.13 -2.62 9.84 22.32 0.22 -2.40 16 21 C -0.01 -0.30 6.31 22.26 0.14 -0.16 16 22 Cl -0.07 -1.58 28.78 -2.72 -0.08 -1.66 16 23 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 24 H 0.35 16.44 9.04 -74.06 -0.67 15.77 16 25 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 26 H 0.04 1.48 7.94 -2.39 -0.02 1.46 16 27 H 0.08 2.80 6.68 -2.38 -0.02 2.78 16 28 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -64.47 295.84 0.21 -64.27 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.46 Total: 22.91 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 2.82 Total: -23.43 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -3.13 Total: -74.97 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.89 Total: -31.95 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -64.47 0.21 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930029028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.678 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds