Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99491 * 2 1 4 4 H 1.48503 * 109.47026 * 269.99644 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.46940 * 150.00043 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99899 * 159.47469 * 7 2 1 9 9 N 1.36933 * 120.00115 * 339.46707 * 7 2 1 10 10 C 1.46495 * 120.00025 * 321.36672 * 9 7 2 11 11 C 1.52994 * 109.47306 * 269.99480 * 10 9 7 12 12 H 1.09001 * 109.47727 * 305.00327 * 11 10 9 13 13 O 1.42905 * 109.47017 * 65.00374 * 11 10 9 14 14 C 1.53004 * 109.47330 * 185.00134 * 11 10 9 15 15 F 1.39898 * 109.47214 * 60.00049 * 14 11 10 16 16 F 1.39900 * 109.47264 * 180.02562 * 14 11 10 17 17 F 1.39907 * 109.47115 * 300.00323 * 14 11 10 18 18 C 1.46507 * 119.99797 * 141.36794 * 9 7 2 19 19 C 1.55228 * 110.46750 * 60.05119 * 18 9 7 20 20 C 1.54888 * 102.58945 * 203.39395 * 19 18 9 21 21 C 1.54265 * 104.31242 * 37.93363 * 20 19 18 22 22 C 1.53882 * 106.59902 * 336.32501 * 21 20 19 23 23 H 0.96998 * 120.00128 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47166 * 30.00557 * 10 9 7 25 25 H 1.09005 * 109.47019 * 149.99378 * 10 9 7 26 26 H 0.96708 * 113.99871 * 59.99712 * 13 11 10 27 27 H 1.08999 * 110.43081 * 182.70878 * 18 9 7 28 28 H 1.09008 * 110.90031 * 85.10738 * 19 18 9 29 29 H 1.08995 * 110.77409 * 321.62811 * 19 18 9 30 30 H 1.09003 * 110.48718 * 279.18966 * 20 19 18 31 31 H 1.08999 * 110.49063 * 156.67945 * 20 19 18 32 32 H 1.09000 * 110.03264 * 95.60612 * 21 20 19 33 33 H 1.09003 * 110.03585 * 216.99628 * 21 20 19 34 34 H 1.08993 * 110.03066 * 119.27896 * 22 21 20 35 35 H 1.08995 * 110.03203 * 240.66996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0389 -1.2316 -0.3285 9 7 1.3909 -2.3505 0.4149 10 6 0.4692 -2.3151 1.5530 11 6 1.2456 -2.5702 2.8463 12 1 1.7954 -3.5076 2.7613 13 8 2.1638 -1.4983 3.0700 14 6 0.2676 -2.6572 4.0197 15 9 -0.6313 -3.7066 3.8007 16 9 0.9777 -2.8900 5.2024 17 9 -0.4380 -1.4541 4.1289 18 6 1.6501 -3.6146 -0.2788 19 6 3.1581 -3.9751 -0.2049 20 6 3.3418 -4.9109 -1.4254 21 6 2.4440 -4.2938 -2.5176 22 6 1.3684 -3.4695 -1.7886 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0089 -1.3369 1.6030 25 1 -0.2920 -3.0853 1.4282 26 1 1.7432 -0.6316 3.1558 27 1 1.0436 -4.4138 0.1473 28 1 3.3874 -4.5003 0.7224 29 1 3.7745 -3.0820 -0.3067 30 1 3.0103 -5.9211 -1.1849 31 1 4.3832 -4.9186 -1.7469 32 1 3.0353 -3.6464 -3.1652 33 1 1.9757 -5.0829 -3.1060 34 1 1.4377 -2.4222 -2.0824 35 1 0.3774 -3.8581 -2.0233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215098.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = -198.645831 kcal Electronic energy + Delta-G solvation = -22193.726973 eV Core-core repulsion = 18390.719529 eV Total energy + Delta-G solvation = -3803.007444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.65547 -47.17576 -47.14755 -37.97368 -36.59424 -34.03093 -31.28306 -29.52317 -27.89443 -26.66410 -25.42214 -22.85787 -21.20354 -19.86252 -19.21194 -18.19579 -18.08876 -17.67268 -16.29291 -15.53752 -15.07421 -14.81013 -14.44099 -14.19934 -14.01518 -13.72493 -13.59946 -13.39541 -13.31989 -13.21830 -12.86517 -12.69929 -12.57366 -11.40213 -11.33120 -11.13059 -10.83530 -10.72267 -10.56972 -10.38383 -10.31152 -10.17604 -10.09059 -9.81934 -9.63751 -9.44743 -8.54285 -6.63747 -5.87847 -3.45370 3.20505 3.32198 3.41063 3.46013 4.20694 4.36634 4.46943 4.54270 5.08436 5.22113 5.27547 5.38637 5.43199 5.68942 5.74550 5.92487 6.11012 6.18872 6.22339 6.34530 6.45096 6.49124 6.57784 6.59200 6.79064 7.01043 7.09173 7.27805 7.36843 7.80179 8.02480 8.44233 9.07665 9.69854 10.27753 11.13198 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.009597 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.604249 B = 2916.785087 C = 4159.077774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.012 3.988 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.063 0.937 9 N -0.561 5.561 10 C 0.116 3.884 11 C 0.054 3.946 12 H 0.119 0.881 13 O -0.519 6.519 14 C 0.411 3.589 15 F -0.188 7.188 16 F -0.192 7.192 17 F -0.185 7.185 18 C 0.168 3.832 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.131 4.131 23 H 0.256 0.744 24 H 0.110 0.890 25 H 0.046 0.954 26 H 0.378 0.622 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -6.458 2.987 7.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.188 4.188 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.080 0.920 9 N -0.278 5.278 10 C -0.012 4.012 11 C -0.012 4.012 12 H 0.137 0.863 13 O -0.324 6.324 14 C 0.356 3.644 15 F -0.170 7.170 16 F -0.174 7.174 17 F -0.167 7.167 18 C 0.060 3.940 19 C -0.174 4.174 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.170 4.170 23 H 0.066 0.934 24 H 0.128 0.872 25 H 0.064 0.936 26 H 0.226 0.774 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.671 -6.779 2.942 7.576 hybrid contribution -0.232 1.245 0.338 1.311 sum 1.439 -5.534 3.279 6.591 Atomic orbital electron populations 1.69973 1.05480 1.25912 1.51783 1.25179 0.94955 0.98687 0.99995 0.86472 0.79785 0.83675 0.77937 1.21353 1.21533 1.20011 1.18823 0.93725 0.84757 1.39716 0.91990 1.43620 1.51357 1.04097 1.28729 1.21628 0.91320 1.04528 0.83774 1.24427 0.91122 0.94222 0.91383 0.86320 1.86599 1.33993 1.17754 1.94013 1.22502 0.82420 0.73330 0.86191 1.93127 1.70414 1.58688 1.94736 1.93143 1.78279 1.94339 1.51598 1.93153 1.80608 1.46325 1.96593 1.21408 0.92978 0.88143 0.91428 1.22960 0.99919 0.98742 0.95803 1.22283 0.98668 0.98475 0.96674 1.22071 0.97659 0.98588 0.97514 1.22478 0.96266 1.01568 0.96685 0.93422 0.87231 0.93603 0.77420 0.93000 0.93230 0.90751 0.92720 0.92902 0.92696 0.93309 0.89669 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 11.49 55.49 0.64 -22.97 16 2 C 0.01 0.30 4.97 -17.43 -0.09 0.21 16 3 Si 0.89 20.36 29.60 -169.99 -5.03 15.33 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.24 -5.92 7.23 -15.06 -0.11 -6.03 16 8 H 0.06 1.58 6.72 -52.48 -0.35 1.23 16 9 N -0.56 -12.52 2.43 -163.58 -0.40 -12.92 16 10 C 0.12 2.45 4.72 -4.05 -0.02 2.43 16 11 C 0.05 0.99 3.21 -26.73 -0.09 0.91 16 12 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 13 O -0.52 -10.20 12.76 -35.23 -0.45 -10.65 16 14 C 0.41 7.13 2.85 37.16 0.11 7.24 16 15 F -0.19 -3.20 16.71 2.25 0.04 -3.16 16 16 F -0.19 -3.29 17.26 2.25 0.04 -3.26 16 17 F -0.19 -3.35 16.51 2.25 0.04 -3.32 16 18 C 0.17 3.28 3.40 -66.08 -0.22 3.05 16 19 C -0.13 -2.39 6.47 -24.56 -0.16 -2.54 16 20 C -0.12 -1.85 6.82 -25.07 -0.17 -2.02 16 21 C -0.12 -1.91 6.80 -25.61 -0.17 -2.08 16 22 C -0.13 -2.50 6.41 -25.61 -0.16 -2.67 16 23 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 24 H 0.11 2.62 5.36 -51.93 -0.28 2.34 16 25 H 0.05 0.94 7.45 -51.93 -0.39 0.55 16 26 H 0.38 6.95 8.69 45.56 0.40 7.35 16 27 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.91 6.92 -51.93 -0.36 1.55 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 295.87 15.07 4.46 4.46 Total: -1.00 -25.94 295.87 -5.58 -31.53 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -3.83 Total: 6.48 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.09 Total: -1.52 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.24 Total: -35.89 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.45 Total: -10.65 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 0.11 Total: -9.73 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.94 -5.58 -31.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215098.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.119 kcal (2) G-P(sol) polarization free energy of solvation -25.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds