Wall clock time and date at job start Mon Mar 30 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99491 * 2 1 4 4 H 1.48503 * 109.47026 * 269.99644 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.46940 * 150.00043 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99899 * 159.47469 * 7 2 1 9 9 N 1.36933 * 120.00115 * 339.46707 * 7 2 1 10 10 C 1.46495 * 120.00025 * 321.36672 * 9 7 2 11 11 C 1.52994 * 109.47306 * 269.99480 * 10 9 7 12 12 H 1.09001 * 109.47727 * 305.00327 * 11 10 9 13 13 O 1.42905 * 109.47017 * 65.00374 * 11 10 9 14 14 C 1.53004 * 109.47330 * 185.00134 * 11 10 9 15 15 F 1.39898 * 109.47214 * 60.00049 * 14 11 10 16 16 F 1.39900 * 109.47264 * 180.02562 * 14 11 10 17 17 F 1.39907 * 109.47115 * 300.00323 * 14 11 10 18 18 C 1.46507 * 119.99797 * 141.36794 * 9 7 2 19 19 C 1.55228 * 110.46750 * 60.05119 * 18 9 7 20 20 C 1.54888 * 102.58945 * 203.39395 * 19 18 9 21 21 C 1.54265 * 104.31242 * 37.93363 * 20 19 18 22 22 C 1.53882 * 106.59902 * 336.32501 * 21 20 19 23 23 H 0.96998 * 120.00128 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47166 * 30.00557 * 10 9 7 25 25 H 1.09005 * 109.47019 * 149.99378 * 10 9 7 26 26 H 0.96708 * 113.99871 * 59.99712 * 13 11 10 27 27 H 1.08999 * 110.43081 * 182.70878 * 18 9 7 28 28 H 1.09008 * 110.90031 * 85.10738 * 19 18 9 29 29 H 1.08995 * 110.77409 * 321.62811 * 19 18 9 30 30 H 1.09003 * 110.48718 * 279.18966 * 20 19 18 31 31 H 1.08999 * 110.49063 * 156.67945 * 20 19 18 32 32 H 1.09000 * 110.03264 * 95.60612 * 21 20 19 33 33 H 1.09003 * 110.03585 * 216.99628 * 21 20 19 34 34 H 1.08993 * 110.03066 * 119.27896 * 22 21 20 35 35 H 1.08995 * 110.03203 * 240.66996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0389 -1.2316 -0.3285 9 7 1.3909 -2.3505 0.4149 10 6 0.4692 -2.3151 1.5530 11 6 1.2456 -2.5702 2.8463 12 1 1.7954 -3.5076 2.7613 13 8 2.1638 -1.4983 3.0700 14 6 0.2676 -2.6572 4.0197 15 9 -0.6313 -3.7066 3.8007 16 9 0.9777 -2.8900 5.2024 17 9 -0.4380 -1.4541 4.1289 18 6 1.6501 -3.6146 -0.2788 19 6 3.1581 -3.9751 -0.2049 20 6 3.3418 -4.9109 -1.4254 21 6 2.4440 -4.2938 -2.5176 22 6 1.3684 -3.4695 -1.7886 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0089 -1.3369 1.6030 25 1 -0.2920 -3.0853 1.4282 26 1 1.7432 -0.6316 3.1558 27 1 1.0436 -4.4138 0.1473 28 1 3.3874 -4.5003 0.7224 29 1 3.7745 -3.0820 -0.3067 30 1 3.0103 -5.9211 -1.1849 31 1 4.3832 -4.9186 -1.7469 32 1 3.0353 -3.6464 -3.1652 33 1 1.9757 -5.0829 -3.1060 34 1 1.4377 -2.4222 -2.0824 35 1 0.3774 -3.8581 -2.0233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215098.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:44 Heat of formation + Delta-G solvation = -213.715704 kcal Electronic energy + Delta-G solvation = -22194.380452 eV Core-core repulsion = 18390.719529 eV Total energy + Delta-G solvation = -3803.660923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.07993 -48.59355 -48.56863 -39.53276 -38.09964 -35.70794 -33.10386 -31.09045 -29.30899 -28.19229 -27.15412 -24.48169 -22.78713 -21.26173 -20.75759 -19.68090 -19.52657 -19.13211 -18.03858 -17.17928 -16.55165 -16.42807 -16.12011 -15.75265 -15.42733 -15.19531 -15.01470 -14.94295 -14.73691 -14.68311 -14.44062 -14.24530 -14.01744 -13.18211 -12.97528 -12.80556 -12.59280 -12.37980 -12.04460 -11.88092 -11.84518 -11.75086 -11.71738 -11.31350 -11.11133 -11.03063 -10.45153 -8.46907 -7.78305 -5.38402 1.46414 1.53471 1.61551 1.76036 2.53363 2.77973 2.91036 3.09486 3.32639 3.60256 3.72965 4.02760 4.04420 4.19001 4.30168 4.38856 4.66993 4.79634 4.84909 4.93288 4.97256 5.02441 5.24106 5.27452 5.36114 5.53604 5.59611 5.66455 5.71859 5.84935 6.49990 6.55478 7.21177 7.87596 8.41076 9.18728 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.009597 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.604249 B = 2916.785087 C = 4159.077774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.028 4.028 3 Si 0.942 3.058 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.229 4.229 8 H 0.051 0.949 9 N -0.574 5.574 10 C 0.118 3.882 11 C 0.064 3.936 12 H 0.132 0.868 13 O -0.530 6.530 14 C 0.422 3.578 15 F -0.183 7.183 16 F -0.187 7.187 17 F -0.190 7.190 18 C 0.157 3.843 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.129 4.129 23 H 0.250 0.750 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.382 0.618 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -8.028 3.198 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.225 4.225 3 Si 0.771 3.229 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.360 4.360 8 H 0.068 0.932 9 N -0.292 5.292 10 C -0.010 4.010 11 C -0.001 4.001 12 H 0.150 0.850 13 O -0.334 6.334 14 C 0.366 3.634 15 F -0.165 7.165 16 F -0.168 7.168 17 F -0.171 7.171 18 C 0.051 3.949 19 C -0.169 4.169 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.168 4.168 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.230 0.770 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.493 -8.366 3.160 9.284 hybrid contribution -0.496 1.673 0.266 1.765 sum 1.997 -6.693 3.426 7.779 Atomic orbital electron populations 1.70077 1.06403 1.25830 1.53777 1.25614 0.95371 1.00661 1.00806 0.85696 0.78766 0.81173 0.77249 1.22018 1.21862 1.19835 1.18816 0.93166 0.85722 1.38257 0.93160 1.43773 1.51295 1.04461 1.29658 1.21479 0.91460 1.03213 0.84820 1.24170 0.90841 0.94407 0.90642 0.85021 1.86576 1.34599 1.18252 1.94018 1.22119 0.82091 0.73287 0.85885 1.93141 1.70212 1.58409 1.94714 1.93155 1.78197 1.94292 1.51171 1.93153 1.80678 1.46705 1.96594 1.21652 0.94606 0.87265 0.91362 1.22846 0.97700 0.98480 0.97825 1.22255 0.99506 0.98673 0.94674 1.22031 0.96796 0.98720 0.97721 1.22400 0.97674 0.99674 0.97076 0.94041 0.89882 0.93182 0.76995 0.91656 0.92104 0.93337 0.90480 0.91316 0.92931 0.90950 0.93752 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 11.49 21.65 0.25 -49.39 16 2 C -0.03 -1.41 4.97 84.86 0.42 -0.99 16 3 Si 0.94 42.48 29.60 68.60 2.03 44.51 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.23 -11.38 7.23 84.03 0.61 -10.77 16 8 H 0.05 2.60 6.72 -2.91 -0.02 2.58 16 9 N -0.57 -25.51 2.43 -671.43 -1.63 -27.14 16 10 C 0.12 4.95 4.72 86.38 0.41 5.36 16 11 C 0.06 2.29 3.21 30.59 0.10 2.38 16 12 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 13 O -0.53 -20.32 12.76 -148.98 -1.90 -22.22 16 14 C 0.42 13.98 2.85 71.98 0.21 14.18 16 15 F -0.18 -5.89 16.71 44.97 0.75 -5.14 16 16 F -0.19 -6.03 17.26 44.97 0.78 -5.25 16 17 F -0.19 -6.70 16.51 44.97 0.74 -5.96 16 18 C 0.16 5.96 3.40 46.18 0.16 6.12 16 19 C -0.13 -4.32 6.47 32.00 0.21 -4.11 16 20 C -0.11 -3.03 6.82 31.67 0.22 -2.82 16 21 C -0.11 -3.37 6.80 31.32 0.21 -3.16 16 22 C -0.13 -4.86 6.41 31.32 0.20 -4.65 16 23 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 24 H 0.08 4.01 5.36 -2.39 -0.01 4.00 16 25 H 0.05 2.01 7.45 -2.38 -0.02 1.99 16 26 H 0.38 13.92 8.69 -74.05 -0.64 13.27 16 27 H 0.07 2.29 7.84 -2.39 -0.02 2.27 16 28 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 2.02 6.92 -2.39 -0.02 2.01 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -54.75 295.87 4.22 -50.53 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.47 Total: 18.50 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 2.73 Total: 1.55 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -1.39 Total: -76.53 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.90 Total: -22.22 kcal Atomic # 9 Polarization: -18.62 SS G_CDS: 2.27 Total: -16.35 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -54.75 4.22 -50.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215098.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.183 kcal (2) G-P(sol) polarization free energy of solvation -54.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds