Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48500 * 109.47485 * 269.99687 * 3 2 1 5 5 H 1.48497 * 109.47167 * 30.00388 * 3 2 1 6 6 H 1.48509 * 109.47084 * 149.99751 * 3 2 1 7 7 C 1.37878 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46736 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21602 * 119.99987 * 359.73127 * 13 12 11 15 15 C 1.47326 * 119.99925 * 180.02562 * 13 12 11 16 16 N 1.37126 * 126.92543 * 359.41100 * 15 13 12 17 17 H 0.96996 * 126.25845 * 359.97438 * 16 15 13 18 18 C 1.34668 * 107.49415 * 179.83924 * 16 15 13 19 19 N 1.30492 * 109.67505 * 0.43835 * 18 16 15 20 20 C 1.34377 * 109.47552 * 359.72762 * 19 18 16 21 21 C 1.47745 * 126.39216 * 180.02562 * 20 19 18 22 22 O 1.21462 * 119.99864 * 180.02562 * 21 20 19 23 23 O 1.34729 * 120.00157 * 359.97438 * 21 20 19 24 24 H 0.97005 * 119.99856 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 26 26 H 1.09005 * 109.46701 * 300.00413 * 9 7 2 27 27 H 1.08999 * 109.46983 * 60.00567 * 10 9 7 28 28 H 1.08993 * 109.47310 * 300.00007 * 10 9 7 29 29 H 1.09004 * 109.47178 * 60.00488 * 11 10 9 30 30 H 1.08993 * 109.47411 * 300.00171 * 11 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 32 32 H 1.08001 * 125.16241 * 180.16347 * 18 16 15 33 33 H 0.96698 * 117.00075 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9830 -7.3713 -0.0024 14 8 0.7874 -7.5935 0.0029 15 6 2.9403 -8.4911 -0.0022 16 7 4.3088 -8.4049 -0.0133 17 1 4.8322 -7.5883 -0.0231 18 6 4.7936 -9.6613 -0.0049 19 7 3.8054 -10.5135 0.0012 20 6 2.6388 -9.8467 0.0032 21 6 1.2876 -10.4442 0.0103 22 8 0.3067 -9.7278 0.0109 23 8 1.1434 -11.7838 0.0151 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 2.8712 -3.6047 0.8891 28 1 2.8726 -3.6039 -0.8909 29 1 0.8540 -5.0447 -0.8923 30 1 0.8532 -5.0450 0.8876 31 1 3.3859 -5.9233 -0.0019 32 1 5.8412 -9.9238 -0.0078 33 1 0.2397 -12.1280 0.0201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088657666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = -105.512845 kcal Electronic energy + Delta-G solvation = -19258.624681 eV Core-core repulsion = 15897.972183 eV Total energy + Delta-G solvation = -3360.652498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.48188 -40.76339 -40.45455 -37.14869 -36.85916 -35.31001 -34.18915 -32.99572 -31.34223 -28.72643 -26.35855 -25.01495 -23.62063 -22.44402 -22.35831 -21.03839 -20.17659 -18.81709 -18.51508 -17.72232 -17.27022 -16.89548 -16.60556 -16.57252 -16.43133 -15.86719 -15.34844 -15.10592 -15.00639 -14.27710 -14.18959 -13.77754 -13.53480 -12.75927 -12.56958 -12.50353 -12.40281 -12.11760 -11.68894 -11.61657 -11.48030 -11.46246 -11.23632 -10.96367 -10.55651 -10.31338 -9.93634 -8.19550 -6.31250 -0.36051 1.12057 1.42030 1.43336 1.47307 1.54139 1.82301 1.95374 2.18788 2.30549 2.42184 3.14610 3.30454 3.75163 3.88285 4.13733 4.19444 4.30865 4.51418 4.53122 4.91651 4.92506 4.99185 5.16130 5.30026 5.51384 5.58672 5.70122 5.84108 6.11760 6.21028 6.33656 6.57259 6.86868 6.99838 7.13872 7.38683 8.92592 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.003202 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.192725 B = 8743.765022 C = 9421.194877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.131 3.869 12 N -0.706 5.706 13 C 0.566 3.434 14 O -0.522 6.522 15 C -0.005 4.005 16 N -0.519 5.519 17 H 0.452 0.548 18 C 0.250 3.750 19 N -0.486 5.486 20 C 0.016 3.984 21 C 0.544 3.456 22 O -0.499 6.499 23 O -0.499 6.499 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.412 0.588 32 H 0.283 0.717 33 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.018 -20.047 -0.035 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.088 0.912 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.007 3.993 12 N -0.360 5.360 13 C 0.350 3.650 14 O -0.396 6.396 15 C -0.130 4.130 16 N -0.125 5.125 17 H 0.297 0.703 18 C -0.035 4.035 19 N -0.206 5.206 20 C -0.117 4.117 21 C 0.385 3.615 22 O -0.385 6.385 23 O -0.313 6.313 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.298 0.702 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 14.141 -20.600 -0.030 24.986 hybrid contribution -0.365 2.021 -0.015 2.053 sum 13.776 -18.579 -0.045 23.129 Atomic orbital electron populations 1.70119 1.08025 1.27782 1.51720 1.26041 0.95717 1.03637 0.94842 0.85412 0.78728 0.78263 0.78418 1.19876 1.21286 1.18194 1.21687 0.93831 0.91886 1.50365 0.91241 1.18958 0.94527 0.93061 0.95089 1.21596 0.98425 0.91287 1.02472 1.21311 0.91823 0.85046 1.01094 1.45756 1.11086 1.04322 1.74793 1.17336 0.87395 0.82211 0.78049 1.91054 1.16134 1.83794 1.48609 1.21047 0.85004 0.94380 1.12547 1.43208 1.04055 1.12561 1.52685 0.70345 1.26397 1.01962 0.77228 0.97929 1.70391 0.97018 1.33771 1.19438 1.19660 0.91905 0.88907 1.11243 1.19713 0.87738 0.80880 0.73156 1.91155 1.40120 1.62347 1.44897 1.84576 1.39714 1.21619 1.85374 0.92861 0.99022 0.99025 0.90946 0.90907 0.92938 0.92945 0.75091 0.70174 0.70828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.54 -29.26 9.11 25.60 0.23 -29.02 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 11 C 0.13 4.41 5.67 86.38 0.49 4.90 16 12 N -0.71 -17.82 5.55 -466.48 -2.59 -20.41 16 13 C 0.57 17.02 7.81 86.63 0.68 17.70 16 14 O -0.52 -21.44 13.27 19.70 0.26 -21.17 16 15 C -0.01 -0.12 7.15 40.86 0.29 0.17 16 16 N -0.52 -5.08 6.02 -186.76 -1.12 -6.21 16 17 H 0.45 0.59 8.31 -92.71 -0.77 -0.18 16 18 C 0.25 2.18 12.96 180.38 2.34 4.52 16 19 N -0.49 -9.75 11.24 -188.21 -2.12 -11.87 16 20 C 0.02 0.43 7.10 41.42 0.29 0.72 16 21 C 0.54 16.08 8.35 70.34 0.59 16.66 16 22 O -0.50 -18.70 14.05 27.85 0.39 -18.30 16 23 O -0.50 -11.00 13.44 -56.39 -0.76 -11.76 16 24 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.41 6.56 7.72 -92.71 -0.72 5.85 16 32 H 0.28 -1.15 8.06 -2.91 -0.02 -1.17 16 33 H 0.43 5.20 9.11 -74.06 -0.67 4.52 16 Total: -1.00 -87.41 299.68 1.09 -86.33 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -0.97 Total: 1.32 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.68 Total: 13.65 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -5.55 Total: -94.97 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.11 Total: -51.24 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -87.41 1.09 -86.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088657666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.188 kcal (2) G-P(sol) polarization free energy of solvation -87.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds