Wall clock time and date at job start Mon Mar 30 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86802 * 119.99688 * 2 1 4 4 H 1.48501 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47249 * 299.99675 * 3 2 1 6 6 H 1.48498 * 109.47334 * 59.99881 * 3 2 1 7 7 C 1.38622 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99856 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.35789 * 116.99999 * 174.96179 * 9 7 2 11 11 C 1.38897 * 119.99880 * 185.06559 * 10 9 7 12 12 C 1.38010 * 120.00050 * 179.77033 * 11 10 9 13 13 C 1.38916 * 119.99878 * 0.50454 * 12 11 10 14 14 N 1.40026 * 120.00004 * 179.72643 * 13 12 11 15 15 C 1.34775 * 120.00315 * 35.14936 * 14 13 12 16 16 O 1.21516 * 120.00086 * 355.48672 * 15 14 13 17 17 O 1.34648 * 120.00202 * 175.49379 * 15 14 13 18 18 C 1.45198 * 117.00370 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47665 * 179.97438 * 18 17 15 20 20 O 1.42894 * 109.47015 * 64.99707 * 19 18 17 21 21 C 1.38915 * 119.99481 * 359.74848 * 13 12 11 22 22 C 1.38004 * 120.00002 * 359.97438 * 21 13 12 23 23 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.00299 * 0.02562 * 11 10 9 25 25 H 1.08002 * 120.00435 * 180.23753 * 12 11 10 26 26 H 0.97001 * 120.00004 * 215.14198 * 14 13 12 27 27 H 1.09006 * 109.47214 * 300.00058 * 18 17 15 28 28 H 1.09003 * 109.47330 * 59.99410 * 18 17 15 29 29 H 1.09000 * 109.47558 * 185.00089 * 19 18 17 30 30 H 1.09003 * 109.46848 * 305.00274 * 19 18 17 31 31 H 0.96704 * 114.00366 * 180.02562 * 20 19 18 32 32 H 1.08001 * 119.99643 * 179.97438 * 21 13 12 33 33 H 1.07993 * 119.99915 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0705 -3.5045 -0.1052 11 6 1.4355 -4.7348 -0.2175 12 6 2.1831 -5.8894 -0.3297 13 6 3.5706 -5.8222 -0.3198 14 7 4.3291 -6.9943 -0.4279 15 6 3.8937 -8.0101 -1.1993 16 8 2.8053 -7.9426 -1.7354 17 8 4.6647 -9.0997 -1.3759 18 6 4.1317 -10.1549 -2.2190 19 6 5.1415 -11.3013 -2.3012 20 8 5.2976 -11.8921 -1.0095 21 6 4.2055 -4.5923 -0.2021 22 6 3.4579 -3.4372 -0.0957 23 1 -0.4850 0.8400 -0.0004 24 1 0.3569 -4.7874 -0.2212 25 1 1.6895 -6.8457 -0.4209 26 1 5.1680 -7.0752 0.0524 27 1 3.1977 -10.5227 -1.7940 28 1 3.9460 -9.7623 -3.2188 29 1 4.7814 -12.0531 -3.0035 30 1 6.1021 -10.9155 -2.6428 31 1 5.9252 -12.6275 -0.9865 32 1 5.2842 -4.5401 -0.1940 33 1 3.9514 -2.4811 -0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092745494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:21 Heat of formation + Delta-G solvation = -122.602111 kcal Electronic energy + Delta-G solvation = -19210.270895 eV Core-core repulsion = 15816.584600 eV Total energy + Delta-G solvation = -3393.686295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60103 -39.02336 -37.73240 -36.84105 -35.75445 -34.08025 -32.19867 -30.35669 -30.22824 -27.85801 -25.39153 -23.43763 -22.28590 -21.88974 -20.62183 -18.87278 -18.03569 -17.96888 -17.32897 -16.59507 -16.34286 -15.99248 -14.82066 -14.58169 -14.48619 -14.29015 -13.75528 -13.59439 -13.24349 -12.85045 -12.82611 -12.53032 -11.88295 -11.75675 -11.58831 -11.54151 -11.06525 -10.83052 -10.70944 -10.49738 -10.45615 -10.17487 -9.72113 -9.27643 -8.73157 -8.22535 -6.97471 -6.45248 -4.03394 2.02005 2.17677 2.30310 3.01286 3.13308 3.14902 3.19494 3.80403 3.96367 4.22080 4.55591 4.62801 4.79462 5.01220 5.08729 5.21434 5.31731 5.36036 5.54629 5.75381 6.04599 6.17889 6.25070 6.33591 6.80396 6.83002 6.95398 7.15139 7.20863 7.21431 7.39411 7.65270 7.75874 7.99239 8.48573 9.00101 9.70021 10.72701 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.061312 B = 0.003168 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.570571 B = 8837.632577 C = 9101.641098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.149 3.851 11 C -0.178 4.178 12 C -0.066 4.066 13 C 0.043 3.957 14 N -0.636 5.636 15 C 0.642 3.358 16 O -0.561 6.561 17 O -0.366 6.366 18 C 0.086 3.914 19 C 0.077 3.923 20 O -0.567 6.567 21 C -0.084 4.084 22 C -0.220 4.220 23 H 0.270 0.730 24 H 0.122 0.878 25 H 0.131 0.869 26 H 0.409 0.591 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.381 0.619 32 H 0.113 0.887 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.923 -17.564 -3.002 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.095 3.905 11 C -0.198 4.198 12 C -0.086 4.086 13 C -0.048 4.048 14 N -0.287 5.287 15 C 0.395 3.605 16 O -0.449 6.449 17 O -0.280 6.280 18 C 0.011 3.989 19 C -0.001 4.001 20 O -0.373 6.373 21 C -0.105 4.105 22 C -0.240 4.240 23 H 0.080 0.920 24 H 0.140 0.860 25 H 0.149 0.851 26 H 0.244 0.756 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.228 0.772 32 H 0.131 0.869 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.530 -16.945 -3.148 20.198 hybrid contribution 1.291 0.307 -0.101 1.330 sum 11.821 -16.639 -3.249 20.667 Atomic orbital electron populations 1.70059 1.05965 1.27603 1.45981 1.25302 0.95853 0.98873 0.96553 0.85636 0.79111 0.80353 0.78247 1.19088 1.20155 1.20148 1.21373 0.91837 0.80827 1.52738 0.88951 1.83995 1.34274 1.11407 1.78173 1.19429 0.90246 0.88141 0.92698 1.20139 0.99795 0.89741 1.10119 1.20779 0.91760 0.98321 0.97721 1.17049 0.90386 0.83324 1.14036 1.41735 1.26061 1.13390 1.47550 1.18141 0.82772 0.80370 0.79215 1.90995 1.21090 1.80562 1.52274 1.86251 1.47718 1.27163 1.66899 1.23002 0.97248 0.84228 0.94384 1.22269 0.98859 0.93371 0.85578 1.86584 1.67476 1.52866 1.30328 1.20455 0.98605 0.90357 1.01060 1.20964 0.93656 0.98310 1.11022 0.92033 0.85967 0.85132 0.75593 0.90325 0.89529 0.91061 0.92342 0.77227 0.86895 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.27 13.67 55.48 0.76 -24.52 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.87 9.48 30.87 0.29 -10.57 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.01 9.76 -0.02 0.00 -5.01 16 10 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 11 C -0.18 -3.95 9.98 -39.42 -0.39 -4.34 16 12 C -0.07 -1.33 8.69 -39.41 -0.34 -1.67 16 13 C 0.04 0.80 6.30 -83.61 -0.53 0.27 16 14 N -0.64 -9.69 5.34 -14.22 -0.08 -9.77 16 15 C 0.64 10.38 8.59 54.05 0.46 10.84 16 16 O -0.56 -10.70 13.57 -19.28 -0.26 -10.96 16 17 O -0.37 -4.95 10.24 -43.13 -0.44 -5.39 16 18 C 0.09 0.91 5.85 37.16 0.22 1.12 16 19 C 0.08 0.55 7.44 37.16 0.28 0.82 16 20 O -0.57 -4.80 13.63 -38.80 -0.53 -5.33 16 21 C -0.08 -1.53 9.96 -39.42 -0.39 -1.92 16 22 C -0.22 -4.70 9.16 -39.42 -0.36 -5.06 16 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 25 H 0.13 2.59 6.22 -52.49 -0.33 2.27 16 26 H 0.41 4.86 8.93 -40.82 -0.36 4.49 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 1.25 9.12 45.56 0.42 1.67 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 LS Contribution 296.77 15.07 4.47 4.47 Total: -1.00 -34.60 296.77 -4.74 -39.34 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.51 Total: 7.98 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.12 Total: -6.19 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.68 Total: -34.28 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.23 Total: -26.68 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.60 -4.74 -39.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092745494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.266 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds