Wall clock time and date at job start Mon Mar 30 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47216 * 269.95379 * 7 6 5 9 9 N 1.46494 * 109.47447 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00646 * 180.02562 * 9 8 7 11 11 O 1.21447 * 119.99420 * 359.97438 * 10 9 8 12 12 C 1.48829 * 120.00510 * 180.02562 * 10 9 8 13 13 O 1.21501 * 120.00017 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00038 * 179.97438 * 12 10 9 15 15 C 1.36115 * 119.99995 * 180.02562 * 14 12 10 16 16 H 1.08005 * 120.00159 * 0.02562 * 15 14 12 17 17 C 1.39590 * 120.00323 * 180.02562 * 15 14 12 18 18 N 1.31021 * 119.99489 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00312 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47154 * 90.00047 * 19 17 15 21 21 H 1.48499 * 109.47107 * 209.99821 * 19 17 15 22 22 H 1.48500 * 109.47259 * 330.00319 * 19 17 15 23 23 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 26 26 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 27 27 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 28 28 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 29 29 H 1.08997 * 109.47677 * 300.00361 * 8 7 6 30 30 H 1.09004 * 109.46884 * 59.99951 * 8 7 6 31 31 H 0.97005 * 120.00083 * 0.02562 * 9 8 7 32 32 H 0.97002 * 120.00283 * 0.02562 * 14 12 10 33 33 H 0.96996 * 119.99593 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 6 1.7006 -3.0070 -1.4581 9 7 1.2809 -4.4105 -1.4653 10 6 1.0875 -5.0501 -2.6358 11 8 1.2607 -4.4628 -3.6845 12 6 0.6605 -6.4759 -2.6431 13 8 0.4867 -7.0633 -1.5938 14 7 0.4666 -7.1153 -3.8135 15 6 0.0756 -8.4190 -3.8202 16 1 -0.0797 -8.9411 -2.8875 17 6 -0.1247 -9.0815 -5.0324 18 7 0.0632 -8.4481 -6.1638 19 14 -0.6605 -10.8709 -5.0415 20 1 -2.1438 -10.9435 -5.0418 21 1 -0.1320 -11.5397 -6.2575 22 1 -0.1320 -11.5521 -3.8325 23 1 -0.3634 -0.0056 1.0276 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 1.9701 2.1169 -0.0004 27 1 2.5963 -3.1320 0.4970 28 1 0.8911 -2.6214 0.5006 29 1 0.9521 -2.4009 -1.9685 30 1 2.6572 -2.9115 -1.9720 31 1 1.1421 -4.8795 -0.6276 32 1 0.6057 -6.6464 -4.6512 33 1 -0.0756 -8.9086 -7.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109425295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:58 Heat of formation + Delta-G solvation = 6.117189 kcal Electronic energy + Delta-G solvation = -19214.558893 eV Core-core repulsion = 15891.039788 eV Total energy + Delta-G solvation = -3323.519105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.36343 -39.55171 -37.35479 -35.78339 -35.12209 -34.23834 -32.35568 -31.41581 -29.11368 -27.96499 -26.03246 -24.33032 -22.63671 -22.15623 -21.03293 -19.50076 -18.38287 -17.39433 -17.13207 -16.53617 -15.97325 -15.87523 -15.12352 -15.06429 -14.50159 -14.15504 -14.01326 -13.88087 -13.78836 -13.10792 -12.84946 -12.63728 -12.27280 -11.80585 -11.77434 -11.62784 -11.22242 -10.59853 -10.56379 -10.49040 -10.47183 -10.39878 -9.75573 -9.46784 -8.88383 -8.33613 -8.26675 -6.71002 -4.03248 1.50119 2.15894 2.38229 2.64460 3.12208 3.13013 3.18039 3.29390 3.98511 4.12157 4.22331 4.22882 4.31001 4.58411 4.59716 4.69439 4.91217 5.01591 5.13749 5.15413 5.20420 5.48263 5.75263 5.79900 5.89018 6.01435 6.52323 6.63344 7.27312 7.60739 7.80071 8.27051 8.50049 8.55112 8.91619 9.27222 9.80380 10.43741 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.052662 B = 0.003097 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.566395 B = 9039.799368 C = 9114.581096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.476 5.476 3 C 0.147 3.853 4 N -0.297 5.297 5 N -0.287 5.287 6 C 0.184 3.816 7 C -0.046 4.046 8 C 0.128 3.872 9 N -0.716 5.716 10 C 0.515 3.485 11 O -0.544 6.544 12 C 0.393 3.607 13 O -0.598 6.598 14 N -0.497 5.497 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.867 5.867 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.264 1.264 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.219 0.781 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.411 0.589 32 H 0.405 0.595 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 15.121 10.505 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.167 5.167 3 C -0.140 4.140 4 N -0.137 5.137 5 N -0.127 5.127 6 C -0.084 4.084 7 C -0.086 4.086 8 C 0.003 3.997 9 N -0.371 5.371 10 C 0.299 3.701 11 O -0.421 6.421 12 C 0.177 3.823 13 O -0.487 6.487 14 N -0.131 5.131 15 C -0.437 4.437 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.505 5.505 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.188 1.188 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.235 0.765 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.247 0.753 32 H 0.240 0.760 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.996 15.147 10.209 18.293 hybrid contribution -1.752 -0.457 -0.218 1.824 sum -2.748 14.689 9.992 17.977 Atomic orbital electron populations 1.22193 0.75083 1.05785 1.04389 1.46226 1.09362 1.06772 1.54302 1.26451 0.87252 0.94935 1.05355 1.74274 1.18112 1.03302 1.17975 1.74310 1.16948 1.03169 1.18313 1.24572 0.87347 0.91917 1.04586 1.20217 1.03675 0.86292 0.98441 1.21155 1.01406 0.82558 0.94622 1.45568 1.70250 1.11514 1.09774 1.20720 0.77213 0.88910 0.83230 1.90706 1.51004 1.68758 1.31610 1.18882 0.91045 0.86752 0.85595 1.90580 1.59575 1.67620 1.30917 1.41569 1.52706 1.11482 1.07364 1.19895 1.42367 0.86447 0.94950 0.86901 1.25608 0.96317 1.01308 0.94375 1.69486 1.44416 1.38420 0.98206 0.85710 0.78975 0.80461 0.78353 1.19886 1.20483 1.18845 0.89690 0.88640 0.88714 0.76488 0.87094 0.88990 0.91733 0.90516 0.75255 0.75980 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 10.89 59.85 0.65 0.93 16 2 N -0.48 -4.00 3.15 -122.69 -0.39 -4.38 16 3 C 0.15 1.33 12.74 -89.94 -1.15 0.19 16 4 N -0.30 -4.05 12.21 29.69 0.36 -3.69 16 5 N -0.29 -4.17 12.21 32.80 0.40 -3.77 16 6 C 0.18 2.06 7.28 -154.99 -1.13 0.93 16 7 C -0.05 -0.44 5.50 -27.89 -0.15 -0.59 16 8 C 0.13 1.64 5.66 -4.05 -0.02 1.61 16 9 N -0.72 -11.26 5.55 -60.94 -0.34 -11.60 16 10 C 0.51 10.79 7.87 -11.88 -0.09 10.69 16 11 O -0.54 -12.53 16.47 5.41 0.09 -12.44 16 12 C 0.39 9.63 7.82 -11.88 -0.09 9.54 16 13 O -0.60 -15.50 16.03 5.37 0.09 -15.42 16 14 N -0.50 -13.07 5.25 -11.59 -0.06 -13.13 16 15 C -0.31 -8.29 9.67 -15.15 -0.15 -8.44 16 16 H 0.11 3.11 7.15 -52.48 -0.38 2.74 16 17 C 0.03 0.80 5.51 -17.39 -0.10 0.70 16 18 N -0.87 -22.96 13.03 55.53 0.72 -22.24 16 19 Si 0.94 19.76 29.56 -169.99 -5.02 14.73 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 0.39 7.81 -51.93 -0.41 -0.01 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.22 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 0.63 7.86 -51.93 -0.41 0.22 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.41 5.85 7.93 -40.82 -0.32 5.52 16 32 H 0.40 10.75 7.35 -40.82 -0.30 10.45 16 33 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -34.99 302.89 -5.29 -40.29 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.48 Total: 11.53 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: -2.23 Total: 15.56 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.70 Total: -58.81 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: 0.18 Total: -27.86 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.99 -5.29 -40.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109425295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.406 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds