Wall clock time and date at job start Mon Mar 30 2020 05:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47274 * 2 1 4 4 C 1.50700 * 109.47185 * 239.99773 * 2 1 3 5 5 H 1.07998 * 120.00265 * 240.00429 * 4 2 1 6 6 C 1.37879 * 119.99929 * 59.99776 * 4 2 1 7 7 N 1.31518 * 119.99565 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00127 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47033 * 90.00427 * 8 6 4 10 10 H 1.48493 * 109.47340 * 210.00378 * 8 6 4 11 11 H 1.48503 * 109.47190 * 330.00568 * 8 6 4 12 12 N 1.46902 * 109.46972 * 120.00015 * 2 1 3 13 13 C 1.46898 * 111.00405 * 58.95252 * 12 2 1 14 14 C 1.38634 * 110.99915 * 294.99629 * 12 2 1 15 15 N 1.33199 * 120.48342 * 81.62299 * 14 12 2 16 16 C 1.31722 * 120.88170 * 180.02562 * 15 14 12 17 17 N 1.31757 * 121.91151 * 359.97438 * 16 15 14 18 18 C 1.33163 * 120.88097 * 0.02562 * 17 16 15 19 19 N 1.38627 * 120.49143 * 180.02562 * 18 17 16 20 20 C 1.39127 * 120.48901 * 261.63911 * 14 12 2 21 21 N 1.48024 * 120.86316 * 359.95967 * 20 14 12 22 22 O 1.21800 * 120.00110 * 94.92310 * 21 20 14 23 23 O 1.21805 * 120.00310 * 274.92883 * 21 20 14 24 24 H 1.09007 * 109.47040 * 300.00004 * 1 2 3 25 25 H 1.09003 * 109.46801 * 59.99642 * 1 2 3 26 26 H 1.08992 * 109.47200 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99481 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47102 * 288.76553 * 13 12 2 29 29 H 1.09000 * 109.46834 * 48.76289 * 13 12 2 30 30 H 1.08996 * 109.47605 * 168.76254 * 13 12 2 31 31 H 1.07996 * 119.04781 * 179.97438 * 16 15 14 32 32 H 0.96999 * 119.99730 * 359.97438 * 19 18 17 33 33 H 0.97001 * 120.00588 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7567 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6696 -0.0020 2.3495 15 7 0.4527 -0.1361 2.8742 16 6 0.1116 0.5166 3.9663 17 7 0.9488 1.3241 4.5852 18 6 2.1838 1.5123 4.1241 19 7 3.0582 2.3633 4.7821 20 6 2.5841 0.8415 2.9723 21 7 3.9475 1.0203 2.4245 22 8 4.1871 1.9539 1.6798 23 8 4.8300 0.2337 2.7182 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7094 1.1617 -3.4844 28 1 0.4603 -2.0752 1.4641 29 1 1.7022 -2.5560 0.2830 30 1 2.0578 -2.6237 2.0257 31 1 -0.8832 0.3862 4.3660 32 1 2.7719 2.8271 5.5844 33 1 3.9561 2.4955 4.4398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133229963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:23 Heat of formation + Delta-G solvation = 71.637391 kcal Electronic energy + Delta-G solvation = -21173.151074 eV Core-core repulsion = 17852.473138 eV Total energy + Delta-G solvation = -3320.677936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01784 -40.79801 -37.93562 -36.01165 -35.64877 -33.37139 -31.87405 -31.19763 -28.94505 -26.68273 -25.80141 -25.31673 -23.20118 -22.88018 -20.29609 -19.15553 -18.87928 -18.33436 -17.74723 -16.47306 -16.44733 -16.09209 -15.47948 -14.98544 -14.78644 -14.33512 -13.82308 -13.17167 -12.45183 -12.21913 -12.04699 -11.52677 -11.38816 -11.21861 -11.02700 -10.96172 -10.79426 -10.65085 -10.55828 -10.42906 -10.17954 -9.88379 -9.58536 -9.09327 -8.88931 -8.53351 -8.01037 -6.14639 -4.21156 0.57544 0.97768 1.05927 1.76336 2.78507 3.26380 3.33301 3.37527 3.52261 3.70183 4.02994 4.34389 4.48643 4.79186 5.01045 5.18683 5.73199 5.97959 6.16439 6.26648 6.46280 6.63860 6.66926 6.71636 6.76694 6.84437 7.14205 7.17431 7.36593 7.58530 7.72540 7.97146 8.05029 8.07454 8.21823 8.80773 9.44065 10.92474 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.006941 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.003148 B = 4032.995073 C = 4527.655847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.220 3.780 3 H 0.044 0.956 4 C -0.511 4.511 5 H 0.068 0.932 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.905 3.095 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.498 5.498 13 C 0.033 3.967 14 C 0.456 3.544 15 N -0.562 5.562 16 C 0.374 3.626 17 N -0.580 5.580 18 C 0.492 3.508 19 N -0.827 5.827 20 C -0.201 4.201 21 N 0.049 4.951 22 O -0.139 6.139 23 O -0.141 6.141 24 H 0.019 0.981 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.209 0.791 32 H 0.417 0.583 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 0.844 13.459 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.118 3.882 3 H 0.061 0.939 4 C -0.549 4.549 5 H 0.086 0.914 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.732 3.268 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.220 5.220 13 C -0.113 4.113 14 C 0.220 3.780 15 N -0.286 5.286 16 C 0.084 3.916 17 N -0.308 5.308 18 C 0.244 3.756 19 N -0.371 5.371 20 C -0.295 4.295 21 N 0.578 4.422 22 O -0.362 6.362 23 O -0.363 6.363 24 H 0.038 0.962 25 H 0.110 0.890 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.225 0.775 32 H 0.249 0.751 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.393 0.713 13.836 13.925 hybrid contribution 0.765 0.079 -1.024 1.281 sum -0.628 0.792 12.812 12.852 Atomic orbital electron populations 1.22405 0.98502 1.00409 1.01194 1.19585 0.91308 0.94394 0.82897 0.93852 1.20942 1.31923 1.13113 0.88935 0.91402 1.24904 0.94819 0.94988 0.99115 1.69885 1.36244 1.22573 1.23938 0.86382 0.79341 0.79191 0.81894 1.20598 1.21044 1.19594 1.60605 1.57067 1.04121 1.00197 1.22336 0.99060 0.86673 1.03265 1.20081 0.84359 0.83269 0.90275 1.69191 1.16229 1.28885 1.14321 1.24924 0.98157 0.83362 0.85130 1.68265 1.01321 1.25342 1.35849 1.17853 0.88304 0.84801 0.84621 1.42258 1.15001 1.48037 1.31789 1.21765 0.87797 1.16374 1.03593 1.42779 1.01465 0.99288 0.98621 1.94576 1.87592 1.23487 1.30505 1.94502 1.39187 1.39921 1.62711 0.96203 0.88993 0.94343 0.92611 0.92998 0.88816 0.93310 0.77514 0.75122 0.75607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.12 37.16 0.30 -3.67 16 2 C 0.22 5.56 2.32 -68.86 -0.16 5.40 16 3 H 0.04 1.25 8.11 -51.93 -0.42 0.83 16 4 C -0.51 -13.78 7.78 -34.44 -0.27 -14.04 16 5 H 0.07 1.82 6.83 -52.49 -0.36 1.46 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.50 -11.01 4.51 -174.66 -0.79 -11.80 16 13 C 0.03 0.65 8.51 60.06 0.51 1.17 16 14 C 0.46 9.06 5.10 -154.70 -0.79 8.27 16 15 N -0.56 -9.75 7.37 -13.89 -0.10 -9.85 16 16 C 0.37 5.15 12.28 -92.25 -1.13 4.02 16 17 N -0.58 -8.15 10.47 -13.88 -0.15 -8.29 16 18 C 0.49 7.43 7.81 -154.72 -1.21 6.22 16 19 N -0.83 -9.18 9.06 31.19 0.28 -8.90 16 20 C -0.20 -3.73 6.26 -79.27 -0.50 -4.22 16 21 N 0.05 0.96 3.37 34.29 0.12 1.08 16 22 O -0.14 -2.93 19.25 -29.46 -0.57 -3.50 16 23 O -0.14 -2.78 19.26 -29.46 -0.57 -3.34 16 24 H 0.02 0.43 6.21 -51.92 -0.32 0.11 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.04 0.88 6.64 -51.93 -0.35 0.54 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.05 0.98 6.16 -51.93 -0.32 0.66 16 29 H 0.09 1.91 6.26 -51.93 -0.32 1.58 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.21 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.42 3.38 8.95 -40.82 -0.37 3.01 16 33 H 0.41 4.42 8.16 -40.82 -0.33 4.09 16 LS Contribution 286.86 15.07 4.32 4.32 Total: -1.00 -30.58 286.86 -8.27 -38.85 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.09 Total: 4.88 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.34 Total: 4.79 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.01 Total: -62.05 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -1.13 Total: -6.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.58 -8.27 -38.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133229963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.484 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds